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[183777_at]

Description B0047.5 /REP_DB=WormBase Gene ID /WP=CE07677 /TR=P91220 /GB=AAB66045.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 4.5
(-3)
A 		46.1
(3)
A 		7.5
(-2.6)
A 		7.3
(-2.6)
A 		42
B 16.8
(-1.4)
A 		5.6
(-2.8)
A 		3.7
(-3)
A 		51.9
(3)
A 		48
C 28.3
(3)
A 		7.8
(-2.2)
A 		4.5
(-3)
A 		21.4
(1.3)
A 		24
avr 16.5
(0.1) 		19.8
(1) 		5.2
(-3) 		26.9
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 5.8
(-2.7)
A 		4.7
(-2.8)
A 		4.1
(-2.9)
A 		56.3
(3)
A 		2.8
(-3)
A 		6.3
(-2.6)
A 		54
B 5.7
(-2.6)
A 		3.9
(-3)
A 		5.2
(-2.7)
A 		31.8
(3)
A 		6.5
(-2.4)
A 		14.8
(-0.7)
A 		28
C 8.5
(-2.4)
A 		4
(-3)
A 		9.4
(-2.2)
A 		17.1
(-1.1)
A 		24.3
(-0.1)
A 		46.2
(3)
A 		42
avr 6.7
(-2.5) 		4.2
(-3) 		6.2
(-2.6) 		35.1
(3) 		11.2
(-1.6) 		22.4
(0.5) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.6
(-2.7)
A 		10
(3)
A 		2
(-2.4)
A 		1.1
(-3)
A 		9
B 5.3
(-0.4)
A 		1.4
(-2.7)
A 		0.9
(-3)
A 		11.1
(3)
A 		10
C 9.4
(3)
A 		2.2
(-2.5)
A 		1.6
(-3)
A 		3.6
(-1.5)
A 		8
avr 5.4
(3) 		4.5
(1.6) 		1.5
(-3) 		5.3
(2.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.1
(-2.9)
A 		1.7
(-2.6)
A 		0.9
(-3)
A 		14.3
(3)
A 		0.9
(-3)
A 		1.5
(-2.7)
A 		13
B 2
(-2.4)
A 		1.3
(-3)
A 		1.3
(-3)
A 		8.4
(3)
A 		2.6
(-1.9)
A 		5.5
(0.5)
A 		7
C 3.1
(-2.2)
A 		1.2
(-3)
A 		2.4
(-2.5)
A 		3.4
(-2.1)
A 		7.8
(-0.2)
A 		15.5
(3)
A 		14
avr 2.1
(-2.4) 		1.4
(-3) 		1.5
(-2.9) 		8.7
(3) 		3.8
(-1) 		7.5
(2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183777_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4821
Sequence Type Exemplar sequence
Representative Public ID B0047.5 NCBI
Target Description B0047.5 /REP_DB=WormBase Gene ID /WP=CE07677 /TR=P91220 /GB=AAB66045.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061764(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061764 NCBI Caenorhabditis elegans B0047.5 (B0047.5) mRNA, complete cds. 11/11 None
B0047.5 ENSEMBL cdna:known chromosome:CEL140:II:2048062:2049108:-1 gene:B0047.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023361 7/11 Cross Hyb Matching Probes None
GENEFINDER00000023379 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2048060-2049133(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0047.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494165 B0047.5 [Caenorhabditis elegans] 1.0E-108
blast AAB94977 Hypothetical protein F52C6.11 [Caenorhabditis elegans] ref|NP_494125.2| F52C6.11 [Caenorhabditis elegans] 5.0E-73
blast AAF39857 Hypothetical protein F59H6.9 [Caenorhabditis elegans] ref|NP_494156.1| F59H6.9 [Caenorhabditis elegans] 1.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 5.3E-9
Pfam IPR000210 EMBL-EBI BTB/POZ domain 7.9E-35
Sequence
Target Sequence 
>C. ELEGANS:183777_AT
atgacagtgttattatcgaggcagctgtcaagatcactaaaatgcacggaatctctaaaa
aagcactgaaaagcttcgaaaaaaccaatgaaaagttctccgatgtggttctttccgttg
aagataaaaaattcttcgttttgagaaaattcctggcatttcactccacctacttcgaag
ctcttcttctcggaaaattcaaagaagctgacaattcagaagtcaccctcaacgacatca
attcgaccgattttcagaatcttctagagcttctttatggtgaaactgctattgataacg
attcagtcgacggaattctccacctggctcacatctacgacgtgccagttgcaaatcgaa
aatgcgaagaatttcttctcgaaaaatctggaaaatcgattaaggatctgcttaaaattg
ccaatcaataccagctggagaatttgacgaaggaatcccttgcgaaaatcaattcatttg
acgatatcaaatcagcagtggccggcgatttagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACAGTGTTATTATCGAGGCAGC 88 45 221 Antisense
ATCGAGGCAGCTGTCAAGATCACTA 61 37 235 Antisense
GAAAATTCCTGGCATTTCACTCCAC 565 353 365 Antisense
ACAATTCAGAAGTCACCCTCAACGA 348 115 431 Antisense
AACGACATCAATTCGACCGATTTTC 484 143 451 Antisense
GAATCTTCTAGAGCTTCTTTATGGT 174 327 477 Antisense
TTCAGTCGACGGAATTCTCCACCTG 141 689 522 Antisense
CTCACATCTACGACGTGCCAGTTGC 700 227 548 Antisense
ATTGCCAATCAATACCAGCTGGAGA 150 7 637 Antisense
GAAGGAATCCCTTGCGAAAATCAAT 505 333 669 Antisense
ATCAGCAGTGGCCGGCGATTTAGAA 302 27 711 Antisense
Sequence Source Affymetrix Proprietary Database