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[183776_at]

Description F01F1.2 /REP_DB=WormBase Gene ID /WP=CE26886 /TR=Q19093 /GB=AAC46636.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 53      6grp_total > 62      4grp_total > 10      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1062
1 2 3 4 range
A 340
(-3)
P 		589.3
(-1.6)
P 		444
(-2.4)
P 		1402
(3)
P 		1062
B 409.1
(-3)
P 		552
(-2.1)
P 		425.1
(-2.9)
P 		1343.2
(3)
P 		934
C 446.6
(-3)
P 		585.1
(-1.7)
P 		535.6
(-2.1)
P 		1071.9
(3)
P 		625
avr 398.6
(-3) 		575.5
(-1.8) 		468.2
(-2.5) 		1272.4
(3) 		874

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 984
1 2 3 4 5 6 range
A 613.8
(-3)
P 		618.3
(-3)
P 		1455.8
(3)
P 		712.5
(-2.3)
P 		930
(-0.7)
P 		636.6
(-2.8)
P 		842
B 993.1
(-1.7)
P 		1097.7
(-0.5)
P 		1376.2
(3)
P 		1082.2
(-0.6)
P 		1060.2
(-0.9)
P 		892.2
(-3)
P 		484
C 471.7
(-3)
P 		1075.6
(1.4)
P 		702.4
(-1.3)
P 		1293
(3)
P 		551.4
(-2.4)
P 		784.8
(-0.7)
P 		821
avr 692.9
(-3) 		930.5
(-0.1) 		1178.1
(3) 		1029.2
(1.2) 		847.2
(-1.1) 		771.2
(-2) 		485
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 123.8
(-2.5)
P 		127.9
(-2.2)
P 		116.1
(-3)
P 		205.2
(3)
P 		89
B 130.5
(-2)
P 		136.3
(-1.8)
P 		98.5
(-3)
P 		286.2
(3)
P 		188
C 147.8
(-3)
P 		168.2
(0.1)
P 		186.7
(3)
P 		180.7
(2.1)
P 		39
avr 134
(-3) 		144.1
(-2.3) 		133.8
(-3) 		224
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 318
1 2 3 4 5 6 range
A 113.1
(-3)
P 		219.9
(0.1)
P 		317
(3)
P 		180.7
(-1)
P 		280.6
(1.9)
P 		155
(-1.8)
P 		204
B 345.5
(-0.5)
P 		365.4
(0.3)
P 		334.2
(-1)
P 		286.6
(-3)
P 		430.7
(3)
P 		332.7
(-1.1)
P 		144
C 174.9
(-3)
P 		328.2
(3)
P 		178.8
(-2.8)
P 		260
(0.3)
P 		178.4
(-2.9)
P 		262.7
(0.4)
P 		153
avr 211.2
(-3) 		304.5
(3) 		276.7
(1.2) 		242.4
(-1) 		296.6
(2.5) 		250.1
(-0.5) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183776_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6602
Sequence Type Exemplar sequence
Representative Public ID F01F1.2 NCBI
Target Description F01F1.2 /REP_DB=WormBase Gene ID /WP=CE26886 /TR=Q19093 /GB=AAC46636.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065872(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065872 NCBI Caenorhabditis elegans F01F1.2 (F01F1.2) mRNA, complete cds. 10/11 None
SNAP00000009929 ENSEMBL cdna:SNAP chromosome:CEL140:III:5878508:5879165:1 11/11 None
GENEFINDER00000009939 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5878508:5882121:1 10/11 None
F01F1.2 ENSEMBL cdna:known chromosome:CEL140:III:5878506:5879283:1 gene:F01F1.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5878506-5879164(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F01F1.2
Entrez Gene 175828 Entrez gene
SwissProt Q19093 EMBL-EBI
WormBase CE26886 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46635 Hypothetical protein F01F1.1a [Caenorhabditis elegans] ref|NP_498274.1| F01F1.1a [Caenorhabditis elegans] 0.0
blast AAN63418 Hypothetical protein F01F1.1c [Caenorhabditis elegans] ref|NP_498275.2| F01F1.1c [Caenorhabditis elegans] 0.0
blast CAE64370 Hypothetical protein CBG09057 [Caenorhabditis briggsae] 0.0
blast AAC46636 Hypothetical protein F01F1.2 [Caenorhabditis elegans] ref|NP_498273.1| F01F1.2 [Caenorhabditis elegans] 1.0E-90
blast AAC46636 Hypothetical protein F01F1.2 [Caenorhabditis elegans] ref|NP_498273.1| F01F1.2 [Caenorhabditis elegans] 2.0E-87
blast CAE64371 Hypothetical protein CBG09058 [Caenorhabditis briggsae] 5.0E-85
blast CAE64371 Hypothetical protein CBG09058 [Caenorhabditis briggsae] 7.0E-82
blast XP_625180 PREDICTED: hypothetical protein XP_625177 [Apis mellifera] 1.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR005062 EMBL-EBI SAC3/GANP family 7.3E-112
Sequence
Target Sequence 
>C. ELEGANS:183776_AT
tatcactgataacctggaaaccttaaaggaaggcgaaattgtgacagacgagaagaccgg
gaagaaatatcgtgtcaagaaaaatattatgccacattattcagctggaggaccacatgg
attaggtgatccagaagatcggactttgaggaaaatcgaggcagatgtgattattccgaa
tagaatgaatacccaaatcgaaagagtggattgcaacgaatcttatttaggactcatcac
ttgctttcgaaccgacggtgctgtttctggcttgaacacgtgtaaaccagctctagaact
ctttaatcgatgcaaatatgaaaagtctggttattttaatgtatctcaaaataacaagaa
catattaagattccacgatccagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCACTGATAACCTGGAAACCTTA 665 647 33 Antisense
CACATTATTCAGCTGGAGGACCACA 611 193 125 Antisense
GGAGGACCACATGGATTAGGTGATC 119 515 139 Antisense
GAGGCAGATGTGATTATTCCGAATA 418 405 190 Antisense
GCAACGAATCTTATTTAGGACTCAT 176 317 245 Antisense
TTAGGACTCATCACTTGCTTTCGAA 231 681 259 Antisense
GCTTTCGAACCGACGGTGCTGTTTC 70 239 275 Antisense
TGCTGTTTCTGGCTTGAACACGTGT 161 581 291 Antisense
GAACACGTGTAAACCAGCTCTAGAA 554 351 306 Antisense
AACCAGCTCTAGAACTCTTTAATCG 159 149 317 Antisense
ACATATTAAGATTCCACGATCCAGC 686 105 392 Antisense
Sequence Source Affymetrix Proprietary Database