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[183775_at]

Description C34G6.6 /REP_DB=WormBase Gene ID /WP=CE08578 /TR=O01494 /GB=AAB52479.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 07      4grp_high_8_8 > 46      6grp_highest_nonorm > 02      6grp_total > 04      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6454
1 2 3 4 range
A 182.7
(-3)
M 		6105.6
(2.9)
P 		6159
(3)
P 		204.8
(-3)
P 		5976
B 189.6
(-3)
P 		6037.5
(2.5)
P 		6545.2
(3)
P 		185.2
(-3)
P 		6360
C 202.4
(-2.9)
A 		6007.1
(2.7)
P 		6275.5
(3)
P 		90.9
(-3)
P 		6185
avr 191.6
(-3) 		6050.1
(2.7) 		6326.6
(3) 		160.3
(-3) 		6166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3422
1 2 3 4 5 6 range
A 4416.7
(3)
P 		3085.7
(0.7)
P 		1916.5
(-1.4)
P 		2266.8
(-0.8)
P 		1857.3
(-1.5)
P 		1014.7
(-3)
P 		3402
B 4233.8
(3)
P 		3070.3
(0.8)
P 		2397.6
(-0.4)
P 		2727.3
(0.2)
P 		1610.4
(-1.9)
P 		994.7
(-3)
P 		3239
C 4155.8
(3)
P 		2805.4
(0.4)
P 		2392.4
(-0.4)
P 		2709.6
(0.2)
P 		1708.4
(-1.7)
P 		1023.5
(-3)
P 		3132
avr 4268.8
(3) 		2987.1
(0.6) 		2235.5
(-0.7) 		2567.9
(-0.1) 		1725.4
(-1.7) 		1011
(-3) 		3258
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2172
1 2 3 4 range
A 66.5
(-2.9)
M 		1325.4
(1.9)
P 		1610.1
(3)
P 		30
(-3)
P 		1580
B 60.5
(-2.9)
P 		1491.1
(2.9)
P 		1516.7
(3)
P 		39.5
(-3)
P 		1477
C 67
(-2.9)
A 		1727.1
(1.7)
P 		2187.2
(3)
P 		15.3
(-3)
P 		2172
avr 64.7
(-2.9) 		1514.5
(2.1) 		1771.3
(3) 		28.3
(-3) 		1743

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1293
1 2 3 4 5 6 range
A 814.2
(1)
P 		1097.4
(3)
P 		417.4
(-1.8)
P 		574.9
(-0.7)
P 		560.4
(-0.8)
P 		247.1
(-3)
P 		850
B 1473.1
(3)
P 		1022
(0.5)
P 		582.2
(-1.8)
P 		722.4
(-1.1)
P 		654.3
(-1.5)
P 		370.9
(-3)
P 		1102
C 1540.4
(3)
P 		856
(-0.4)
P 		608.9
(-1.7)
P 		544.9
(-2)
P 		552.8
(-1.9)
P 		342.6
(-3)
P 		1198
avr 1275.9
(3) 		991.8
(1.2) 		536.2
(-1.6) 		614.1
(-1.2) 		589.2
(-1.3) 		320.2
(-3) 		956
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183775_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1897
Sequence Type Exemplar sequence
Representative Public ID C34G6.6 NCBI
Target Description C34G6.6 /REP_DB=WormBase Gene ID /WP=CE08578 /TR=O01494 /GB=AAB52479.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170870(11), NM_171838(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170870 NCBI Caenorhabditis elegans C34G6.6a (C34G6.6) mRNA, complete cds. 11/11 None
NM_171838 NCBI Caenorhabditis elegans C34G6.6b (C34G6.6) mRNA, complete cds. 11/11 None
SNAP00000014374 ENSEMBL cdna:SNAP chromosome:CEL140:I:5883108:5887025:-1 11/11 None
GENEFINDER00000014382 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5883108:5887025:-1 11/11 None
C34G6.6a.1 ENSEMBL cdna:known chromosome:CEL140:I:5882309:5887090:-1 gene:C34G6.6 11/11 A 
C34G6.6a.2 ENSEMBL cdna:known chromosome:CEL140:I:5882558:5887090:-1 gene:C34G6.6 11/11 A 
C34G6.6b ENSEMBL cdna:known chromosome:CEL140:I:5883108:5887025:-1 gene:C34G6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5883107-5887025(-) 100.0 100.0
Public Domain and Genome References
Ensembl C34G6.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52479 Hypothetical protein C34G6.6a [Caenorhabditis elegans] ref|NP_740858.1| C34G6.6a [Caenorhabditis elegans] 0.0
blast AAM15558 Hypothetical protein C34G6.6b [Caenorhabditis elegans] ref|NP_740859.1| C34G6.6b [Caenorhabditis elegans] 0.0
blast CAE60409 Hypothetical protein CBG04015 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 5.5E-13
Pfam IPR003014 EMBL-EBI N/apple PAN 1.7E-28
Pfam IPR003014 EMBL-EBI N/apple PAN 4.0E-30
Pfam IPR003014 EMBL-EBI N/apple PAN 6.5E-31
Pfam IPR003014 EMBL-EBI N/apple PAN 6.9E-21
Pfam IPR003014 EMBL-EBI N/apple PAN 1.9E-7
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 5.5E-13
Pfam IPR003014 EMBL-EBI N/apple PAN 1.9E-7
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 5.5E-13
Pfam IPR003014 EMBL-EBI N/apple PAN 4.0E-30
Pfam IPR003014 EMBL-EBI N/apple PAN 6.5E-31
Pfam IPR003014 EMBL-EBI N/apple PAN 6.9E-21
Pfam IPR003014 EMBL-EBI N/apple PAN 1.9E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_740858.1 1 1034-1056
NP_740859.1 1 1038-1060
C34G6.6a.1 1 1034-1056
C34G6.6a.2 1 1034-1056
C34G6.6b 1 1038-1060
SNAP00000014374 1 1021-1043
GENEFINDER00000014382 1 1038-1060
Sequence
Target Sequence 
>C. ELEGANS:183775_AT
gtcaagaactgccacgctgaaccaggagttgctggaggaaaggccggagccggagagaag
cttcgacttatcgatggtggatgcccaactccagctgttgcacaaaagttgatcccagga
gctattgaaatcaagtcatcggctgtgaagactacaaaaatgcaagctttccgtttcgat
tcatctgcttcaatcagagttacatgcgaagttgagatttgcaagggagattgtgaacca
gttgagtgtgctttaaccggaggagtcaagaaatcattcggaagaaagaagagagaagtt
agcaataatattgaagaattcgagacaaaccggtacctgattccaagaagatctcacgcc
accacctccatcgtcatcattgacccacttcaacaggtatgcacaaaagtaaatgagcca
gttgccatgtcacgtgcttcaacacttgatcttcttcgtgaagatgctcacgaggttcag
atgattgaggaaggatcaatctgcctgaactctgtcacagtttttgccatctttggaacc
cttgcggttctgattcttggacaaactgttgtcattgctcactacgcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAAGAACTGCCACGCTGAACCAG 368 463 2428 Antisense
GCCGGAGCCGGAGAGAAGCTTCGAC 358 283 2470 Antisense
CAAGCTTTCCGTTTCGATTCATCTG 89 185 2590 Antisense
GAGACAAACCGGTACCTGATTCCAA 219 391 2749 Antisense
TCATCATTGACCCACTTCAACAGGT 661 619 2801 Antisense
AAATGAGCCAGTTGCCATGTCACGT 710 119 2838 Antisense
GTCACGTGCTTCAACACTTGATCTT 563 465 2856 Antisense
CAATCTGCCTGAACTCTGTCACAGT 546 181 2924 Antisense
CTGTCACAGTTTTTGCCATCTTTGG 570 239 2939 Antisense
CCTTGCGGTTCTGATTCTTGGACAA 549 269 2967 Antisense
ACTGTTGTCATTGCTCACTACGCAG 168 97 2992 Antisense
Sequence Source Affymetrix Proprietary Database