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[183774_s_at]

Description K12H6.9 /REP_DB=WormBase Gene ID /WP=CE20012 /TR=Q9N5H2 /GB=AAF39938.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 09      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 18.8
(-2.7)
A 		12.8
(-3)
A 		27.3
(-2.4)
A 		148.6
(3)
A 		136
B 9
(-3)
A 		41.1
(-1.5)
A 		51.8
(-1)
A 		138.6
(3)
P 		130
C 35.7
(-2.1)
A 		37.2
(-2.1)
A 		19.9
(-3)
A 		131.1
(3)
A 		111
avr 21.2
(-3) 		30.4
(-2.5) 		33
(-2.4) 		139.4
(3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 10.4
(-1)
A 		24.4
(3)
A 		4.9
(-2.6)
A 		5
(-2.6)
A 		3.5
(-3)
A 		17.9
(1.1)
A 		21
B 17.1
(1.3)
A 		5.2
(-2.1)
A 		2
(-3)
A 		19.4
(1.9)
A 		13.8
(0.3)
A 		23.2
(3)
A 		21
C 15.8
(-0.7)
A 		14.6
(-0.9)
A 		23.2
(0.8)
A 		24.5
(1.1)
A 		34.2
(3)
A 		4.2
(-3)
A 		30
avr 14.4
(0.7) 		14.7
(0.9) 		10
(-3) 		16.3
(2.3) 		17.2
(3) 		15.1
(1.3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 6.8
(-1.7)
A 		2.8
(-3)
A 		7.1
(-1.6)
A 		21.8
(3)
A 		19
B 2.9
(-3)
A 		10.2
(-1.4)
A 		12
(-0.9)
A 		29.5
(3)
P 		27
C 11.8
(-1.1)
A 		10.7
(-1.5)
A 		6.9
(-3)
A 		22.1
(3)
A 		15
avr 7.2
(-3) 		7.9
(-2.8) 		8.7
(-2.5) 		24.5
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.9
(-2.4)
A 		8.7
(3)
A 		1.1
(-3)
A 		1.3
(-2.8)
A 		1.1
(-3)
A 		4.4
(-0.4)
A 		8
B 6
(1)
A 		1.7
(-2.1)
A 		0.5
(-3)
A 		5.1
(0.4)
A 		5.6
(0.7)
A 		8.7
(3)
A 		8
C 5.9
(-0.2)
A 		4.4
(-1.1)
A 		5.9
(-0.2)
A 		4.9
(-0.8)
A 		11.1
(3)
A 		1.4
(-3)
A 		10
avr 4.6
(0.7) 		4.9
(1.2) 		2.5
(-3) 		3.8
(-0.7) 		5.9
(3) 		4.8
(1.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183774_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4917
Sequence Type Exemplar sequence
Representative Public ID K12H6.9 NCBI
Target Description K12H6.9 /REP_DB=WormBase Gene ID /WP=CE20012 /TR=Q9N5H2 /GB=AAF39938.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061974(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061974 NCBI Caenorhabditis elegans K12H6.9 (K12H6.9) mRNA, complete cds. 11/11 None
SNAP00000024511 ENSEMBL cdna:SNAP chromosome:CEL140:II:2824413:2824910:1 11/11 None
GENEFINDER00000024519 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2824413:2824997:1 11/11 None
K12H6.9 ENSEMBL cdna:known chromosome:CEL140:II:2824413:2824945:1 gene:K12H6.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2824411-2825031(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K12H6.9
Entrez Gene 173627 Entrez gene
SwissProt Q9N5H2 EMBL-EBI
WormBase CE33423 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494375 K12H6.9 [Caenorhabditis elegans] gb|AAF39938.2| Hypothetical protein K12H6.9 [Caenorhabditis elegans] 1.0E-69
blast NP_494375 K12H6.9 [Caenorhabditis elegans] gb|AAF39938.2| Hypothetical protein K12H6.9 [Caenorhabditis elegans] 4.0E-69
blast NP_494377 K12H6.8 [Caenorhabditis elegans] gb|AAF39937.1| Hypothetical protein K12H6.8 [Caenorhabditis elegans] 3.0E-14
blast NP_494377 K12H6.8 [Caenorhabditis elegans] gb|AAF39937.1| Hypothetical protein K12H6.8 [Caenorhabditis elegans] 4.0E-14
Sequence
Target Sequence 
>C. ELEGANS:183774_S_AT
ctctctattcactcattccacgaggacaagatatcgaccagtatctcgcaactcacgatg
ttcgagacgttcacgtcttcacagcaggcagtagcactttgggatctcgagctctggctg
aactcactgtatacagaggttatcaccaagatagagtctacgcgtatctctggctcagtc
cgagcaagcagagcgccaccggatacacaatgtccaagggattcatctgtgccaacatta
tgtgcgttggagagcagccatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTCTATTCACTCATTCCACGAGG 342 229 140 Antisense
GATATCGACCAGTATCTCGCAACTC 32 427 169 Antisense
GTATCTCGCAACTCACGATGTTCGA 701 453 180 Antisense
TCACGATGTTCGAGACGTTCACGTC 285 627 192 Antisense
TCACGTCTTCACAGCAGGCAGTAGC 207 625 210 Antisense
GCAGTAGCACTTTGGGATCTCGAGC 688 311 227 Antisense
TGGCTGAACTCACTGTATACAGAGG 81 545 254 Antisense
GATAGAGTCTACGCGTATCTCTGGC 97 423 289 Antisense
GTATCTCTGGCTCAGTCCGAGCAAG 709 453 303 Antisense
CTCAGTCCGAGCAAGCAGAGCGCCA 98 227 313 Antisense
TATGTGCGTTGGAGAGCAGCCATCA 59 657 378 Antisense
Sequence Source Affymetrix Proprietary Database