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[183773_at]

Description K12B6.4 /REP_DB=WormBase Gene ID /WP=CE12170 /TR=O16381 /GB=AAB65919.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 54      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 340
1 2 3 4 range
A 346.6
(3)
P 		102.2
(-1.4)
P 		91.5
(-1.6)
M 		14.6
(-3)
A 		332
B 306.1
(3)
P 		137.4
(-0.4)
P 		101.7
(-1.1)
P 		6.9
(-3)
A 		299
C 300.7
(3)
P 		187.5
(0.2)
P 		147.2
(-0.7)
P 		53.9
(-3)
A 		247
avr 317.8
(3) 		142.4
(-0.6) 		113.5
(-1.2) 		25.1
(-3) 		293

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 370
1 2 3 4 5 6 range
A 199.4
(2.7)
P 		134.4
(0.4)
P 		207.1
(3)
P 		151.3
(1)
P 		130.6
(0.2)
P 		42.2
(-3)
A 		165
B 411.9
(3)
P 		247.7
(0.3)
P 		275.8
(0.7)
P 		137.8
(-1.5)
P 		92.4
(-2.3)
P 		49.4
(-3)
A 		363
C 202.8
(3)
P 		178.6
(2)
P 		140.8
(0.4)
P 		122.8
(-0.4)
P 		85.7
(-1.9)
P 		59.9
(-3)
A 		143
avr 271.4
(3) 		186.9
(0.7) 		207.9
(1.3) 		137.3
(-0.6) 		102.9
(-1.6) 		50.5
(-3) 		221
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 126.2
(3)
P 		22.2
(-2)
P 		23.9
(-1.9)
M 		2.1
(-3)
A 		124
B 97.6
(3)
P 		33.9
(-1)
P 		23.6
(-1.6)
P 		1.5
(-3)
A 		96
C 99.5
(3)
P 		53.9
(-0)
P 		51.3
(-0.2)
P 		9.1
(-3)
A 		90
avr 107.8
(3) 		36.7
(-1.1) 		32.9
(-1.3) 		4.2
(-3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 36.8
(1.2)
P 		47.8
(3)
P 		45.1
(2.6)
P 		38.4
(1.5)
P 		39.4
(1.7)
P 		10.3
(-3)
A 		38
B 143.3
(3)
P 		82.4
(0.1)
P 		67
(-0.7)
P 		36.5
(-2.1)
P 		37.5
(-2.1)
P 		18.4
(-3)
A 		125
C 75.2
(3)
P 		54.5
(0.7)
P 		35.8
(-1.3)
P 		24.7
(-2.5)
P 		27.7
(-2.2)
P 		20.1
(-3)
A 		55
avr 85.1
(3) 		61.6
(1) 		49.3
(-0.1) 		33.2
(-1.5) 		34.9
(-1.4) 		16.3
(-3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183773_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12293
Sequence Type Exemplar sequence
Representative Public ID K12B6.4 NCBI
Target Description K12B6.4 /REP_DB=WormBase Gene ID /WP=CE12170 /TR=O16381 /GB=AAB65919.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072204(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072204 NCBI Caenorhabditis elegans K12B6.4 (K12B6.4) mRNA, complete cds. 11/11 None
SNAP00000011409 ENSEMBL cdna:SNAP chromosome:CEL140:V:6282974:6283730:-1 11/11 None
GENEFINDER00000011422 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6282974:6283730:-1 11/11 None
K12B6.4 ENSEMBL cdna:known chromosome:CEL140:V:6282974:6283730:-1 gene:K12B6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6282973-6283730(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K12B6.4
Entrez Gene 187317 Entrez gene
SwissProt O16381 EMBL-EBI
WormBase CE12170 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65919 Hypothetical protein K12B6.4 [Caenorhabditis elegans] ref|NP_504605.1| K12B6.4 [Caenorhabditis elegans] 1.0E-102
blast CAE71858 Hypothetical protein CBG18902 [Caenorhabditis briggsae] 3.0E-97
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504605.1 4 7-29,78-100,112-134,149-171
K12B6.4 4 7-29,78-100,112-134,149-171
SNAP00000011409 4 7-29,78-100,112-134,149-171
GENEFINDER00000011422 4 7-29,78-100,112-134,149-171
Sequence
Target Sequence 
>C. ELEGANS:183773_AT
gtaaccagtcttcagctcattgttcttgtgctgaccctttcaagtactggtcttattctt
gatcgttatcgaacatggcagactgtgtatcccagaactccttataatgcaacagcacag
gcagctgcgaatggtactctaaaattcaacgcaaccatctggagtgagtcttgggtagag
ctcggcatggcttggtatgtcggattcggatcattttggcttttttcaattctcatcctt
gtcttgtcattcaaatattatcgtcctgtgtttgtggtgccaaacttcacggctctcgtc
gtcggaatattcatgaatcttctggcatttggagttcttctcgcgcggatattggttgtt
tcaaaggattataggactgatgagtatgaggaaacaatcattatttatgtgatgggactg
tgcctttttgcatgtatatgctgtcttctcttcatcatattcatttctaaatatcacact
tttctccggaatcgttacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACCAGTCTTCAGCTCATTGTTC 179 463 61 Antisense
GTTCTTGTGCTGACCCTTTCAAGTA 632 443 82 Antisense
GTACTGGTCTTATTCTTGATCGTTA 371 459 104 Antisense
GGCAGACTGTGTATCCCAGAACTCC 48 535 137 Antisense
CAGGCAGCTGCGAATGGTACTCTAA 636 207 178 Antisense
GAGCTCGGCATGGCTTGGTATGTCG 532 387 238 Antisense
TTTTCAATTCTCATCCTTGTCTTGT 118 677 283 Antisense
ATTATCGTCCTGTGTTTGTGGTGCC 442 13 317 Antisense
TTGTGGTGCCAAACTTCACGGCTCT 640 707 332 Antisense
TGTATATGCTGTCTTCTCTTCATCA 343 561 493 Antisense
CACACTTTTCTCCGGAATCGTTACG 609 193 535 Antisense
Sequence Source Affymetrix Proprietary Database