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[183772_at]

Description F22G12.3 /REP_DB=WormBase Gene ID /WP=CE15890 /TR=O45397 /GB=CAB07367.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 13      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.6
(-1.8)
A 		1
(-3)
A 		1.2
(-2.6)
A 		4.1
(3)
A 		3
B 2.2
(3)
A 		1.4
(-1)
A 		1
(-3)
A 		1.1
(-2.5)
A 		1
C 2.1
(-0.1)
A 		1.4
(-1.4)
A 		0.5
(-3)
A 		3.8
(3)
A 		3
avr 2
(0.1) 		1.3
(-1.9) 		0.9
(-3) 		3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 2
(0.5)
A 		1
(-3)
A 		1.5
(-1.2)
A 		1.2
(-2.3)
A 		2.7
(3)
A 		2.1
(0.9)
A 		2
B 0.6
(-2.7)
A 		2.6
(3)
A 		0.5
(-3)
A 		1.3
(-0.7)
A 		1.1
(-1.3)
A 		1.1
(-1.3)
A 		2
C 1.4
(-1.9)
A 		1.4
(-1.9)
A 		1.6
(-1.1)
A 		1.7
(-0.8)
A 		1.1
(-3)
A 		2.7
(3)
A 		2
avr 1.3
(-2.3) 		1.7
(0.8) 		1.2
(-3) 		1.4
(-1.5) 		1.6
(0) 		2
(3) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.6
(3)
A 		0.2
(-3)
A 		0.3
(-1.5)
A 		0.6
(3)
A 		0
B 0.7
(3)
A 		0.3
(-1.8)
A 		0.2
(-3)
A 		0.2
(-3)
A 		1
C 0.7
(3)
A 		0.4
(-0.6)
A 		0.2
(-3)
A 		0.6
(1.8)
A 		1
avr 0.7
(3) 		0.3
(-1.8) 		0.2
(-3) 		0.5
(0.6) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.4
(-1.8)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.8
(3)
A 		0.5
(-0.6)
A 		1
B 0.2
(-2.3)
A 		0.9
(3)
A 		0.1
(-3)
A 		0.3
(-1.5)
A 		0.5
(0)
A 		0.4
(-0.8)
A 		1
C 0.5
(-1)
A 		0.4
(-2)
A 		0.4
(-2)
A 		0.3
(-3)
A 		0.4
(-2)
A 		0.9
(3)
A 		1
avr 0.4
(-1) 		0.5
(1) 		0.3
(-3) 		0.3
(-3) 		0.6
(3) 		0.6
(3) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183772_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1674
Sequence Type Exemplar sequence
Representative Public ID F22G12.3 NCBI
Target Description F22G12.3 /REP_DB=WormBase Gene ID /WP=CE15890 /TR=O45397 /GB=CAB07367.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060903(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060903 NCBI Caenorhabditis elegans F22G12.3 (F22G12.3) mRNA, complete cds. 11/11 None
SNAP00000002513 ENSEMBL cdna:SNAP chromosome:CEL140:I:13160716:13161807:1 11/11 None
GENEFINDER00000002518 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13160716:13162239:1 11/11 None
F22G12.3 ENSEMBL cdna:known chromosome:CEL140:I:13160716:13161807:1 gene:F22G12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13160646-13161738(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F22G12.3
Entrez Gene 184868 Entrez gene
SwissProt O45397 EMBL-EBI
WormBase CE15890 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07367 Hypothetical protein F22G12.3 [Caenorhabditis elegans] ref|NP_493304.1| F22G12.3 [Caenorhabditis elegans] 0.0
blast CAB61098 Hypothetical protein Y53F4B.24 [Caenorhabditis elegans] ref|NP_497110.1| Y53F4B.24 [Caenorhabditis elegans] 7.0E-28
blast CAB61098 Hypothetical protein Y53F4B.24 [Caenorhabditis elegans] ref|NP_497110.1| Y53F4B.24 [Caenorhabditis elegans] 9.0E-28
blast CAB03292 Hypothetical protein T05D4.2 [Caenorhabditis elegans] ref|NP_499803.1| T05D4.2 [Caenorhabditis elegans] 4.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.9E-4
Sequence
Target Sequence 
>C. ELEGANS:183772_AT
gaatctcctatagtcgagctttccatggatatctctgaactgaaagataaacaacaatca
gtcatcgattggataaaatctagacaacgttcgattgagaaactctcaatatatggagaa
aatgtttcaaccgaggattttgcgatagttgagaacaataaaggtttcacgaaagagttc
ctgtttgaaatggaaaccgacgaaaacttccatagtgatttcacttttaatggaaagtct
ctaactgtgtacaagggaaagtggttcaaattgaatcaactattgaacagcgactgtgcg
gaaatatatatagttaattctttatcagatagtgaatggaacacttttcttagaaaatgg
atcaatatggaatcgaatttgaatctgaaacgattggagttcgatatcccagaacttcaa
tcacttttttcaattctcctgctaccctccgaatctgtggccagtattgcaacgaatgcc
ggaatgaacatgattgagaataaatttaaaaacttcatggtaattcgacgcaatgatgga
gcaataggtgttctcggaatcaggtggaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCTCCTATAGTCGAGCTTTCCA 397 329 394 Antisense
GAGCTTTCCATGGATATCTCTGAAC 62 389 409 Antisense
GGTTTCACGAAAGAGTTCCTGTTTG 413 505 556 Antisense
GAAACCGACGAAAACTTCCATAGTG 13 127 586 Antisense
GGAAAGTCTCTAACTGTGTACAAGG 323 527 625 Antisense
AACGATTGGAGTTCGATATCCCAGA 398 143 782 Antisense
GATATCCCAGAACTTCAATCACTTT 402 425 796 Antisense
CCCTCCGAATCTGTGGCCAGTATTG 118 261 838 Antisense
GCCAGTATTGCAACGAATGCCGGAA 248 281 853 Antisense
AAACTTCATGGTAATTCGACGCAAT 158 127 903 Antisense
AGGTGTTCTCGGAATCAGGTGGACA 63 57 939 Antisense
Sequence Source Affymetrix Proprietary Database