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[183771_at]

Description F55B12.5 /REP_DB=WormBase Gene ID /WP=CE11142 /TR=Q93796 /GB=CAB02126.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 09      4grp_highest_8_8 > 39      4grp_high_8_8 > 03      6grp_highest_nonorm > 63      6grp_total > 92      4grp_total > 05      6grp_highest_sub > De      6grp_cgc > 90      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1040
1 2 3 4 range
A 950.1
(-0.9)
P 		685.4
(-2.7)
P 		640.3
(-3)
P 		1537.2
(3)
P 		897
B 931.3
(-0.4)
P 		608.2
(-2.6)
P 		556.3
(-3)
P 		1423.8
(3)
P 		868
C 946.9
(-0)
P 		605.6
(-2.3)
P 		497.3
(-3)
P 		1408.1
(3)
P 		911
avr 942.8
(-0.5) 		633.1
(-2.5) 		564.6
(-3) 		1456.4
(3) 		892

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 683.9
(0.5)
P 		753.6
(3)
P 		614.3
(-2.1)
P 		621.6
(-1.8)
P 		718.7
(1.7)
P 		589.4
(-3)
P 		164
B 710.7
(3)
P 		620.9
(0.7)
P 		704.2
(2.8)
P 		580.2
(-0.4)
P 		708.8
(3)
P 		480.4
(-3)
P 		230
C 583.7
(-2.1)
P 		557.3
(-3)
P 		734
(3)
P 		645.2
(-0)
P 		731.2
(2.9)
P 		568
(-2.6)
P 		177
avr 659.4
(0.9) 		643.9
(0.4) 		684.2
(1.8) 		615.7
(-0.6) 		719.6
(3) 		545.9
(-3) 		174
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 217
1 2 3 4 range
A 345.9
(3)
P 		148.8
(-3)
P 		167.4
(-2.4)
P 		225
(-0.7)
P 		197
B 297
(2.8)
P 		150.2
(-2.3)
P 		128.9
(-3)
P 		303.4
(3)
P 		175
C 313.4
(3)
P 		174.1
(-3)
P 		173.3
(-3)
P 		237.4
(-0.3)
P 		140
avr 318.8
(3) 		157.7
(-3) 		156.5
(-3) 		255.3
(0.7) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 126.1
(-3)
P 		268
(3)
P 		133.8
(-2.7)
P 		157.6
(-1.7)
P 		216.9
(0.8)
P 		143.5
(-2.3)
P 		142
B 247.3
(1.2)
P 		206.7
(-0.6)
P 		171
(-2.2)
P 		153.7
(-3)
P 		288
(3)
P 		179.1
(-1.9)
P 		134
C 216.4
(1.9)
P 		170.1
(-0.7)
P 		186.8
(0.2)
P 		129.7
(-3)
P 		236.6
(3)
P 		190.2
(0.4)
P 		107
avr 196.6
(-0) 		214.9
(1.1) 		163.9
(-2) 		147
(-3) 		247.2
(3) 		170.9
(-1.6) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183771_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13631
Sequence Type Exemplar sequence
Representative Public ID F55B12.5 NCBI
Target Description F55B12.5 /REP_DB=WormBase Gene ID /WP=CE11142 /TR=Q93796 /GB=CAB02126.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074023(10), AY491012(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074023 NCBI Caenorhabditis elegans F55B12.5 (F55B12.5) mRNA, complete cds. 10/11 None
AY491012 NCBI Caenorhabditis elegans clone yk32e7 nose resistant to fluoxetine (nrf-5) mRNA, partial cds. 11/11 None
SNAP00000009643 ENSEMBL cdna:SNAP chromosome:CEL140:V:13830858:13833414:1 10/11 None
GENEFINDER00000009651 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13830858:13833414:1 10/11 None
F55B12.5.1 ENSEMBL cdna:known chromosome:CEL140:V:13830809:13833629:1 gene:F55B12.5 10/11 None
F55B12.5.2 ENSEMBL cdna:known chromosome:CEL140:V:13830856:13833629:1 gene:F55B12.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13830857-13833414(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55B12.5
Entrez Gene 179879 Entrez gene
SwissProt Q93796 EMBL-EBI
WormBase CE32438 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02126 Hypothetical protein F55B12.5 [Caenorhabditis elegans] ref|NP_506424.2| F55B12.5 [Caenorhabditis elegans] 0.0
blast AAS18681 nose resistant to fluoxetine [Caenorhabditis elegans] 0.0
blast CAE66230 Hypothetical protein CBG11473 [Caenorhabditis briggsae] 0.0
blast AAS18682 nose resistant to fluoxetine [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 1.5E-30
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 1.5E-30
Sequence
Target Sequence 
>C. ELEGANS:183771_AT
gaagtttccgctaatcttactgaacaaccgattctccaaatcgatgctcatcttggagca
cgagttcaattgtctggaaatgtctcaatcatgttccatggacgagaacaactccatgat
gttcttcatgctaacacaaagttgcacgtcacgctgaagccaactgtccggcattcgcgt
atttttggagatgtttctctgactaatgtggatgtcaacgtttttgatgtaagttgtatt
caagaaaaactaattctaaagaatttttcctgtataaatctgaaagtcgaacaaaaattt
cagcttggacttggcggaccactcgctgctccaatcgaaaagctcttctcatttgtggtc
ccacgtgtactctggcctcaagtcaaaaagcgtctgcgctttgcgatgaaccgtcgtgga
gtcaaactgccaatattctgcggagtcgaactagagcataccgaattggacttcgttgat
catgctgtactcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTTTCCGCTAATCTTACTGAAC 179 337 1141 Antisense
GATTCTCCAAATCGATGCTCATCTT 147 433 1170 Antisense
AAAGTTGCACGTCACGCTGAAGCCA 265 123 1278 Antisense
TGTCCGGCATTCGCGTATTTTTGGA 299 557 1305 Antisense
TTTCAGCTTGGACTTGGCGGACCAC 252 671 1438 Antisense
CACTCGCTGCTCCAATCGAAAAGCT 654 197 1460 Antisense
CATTTGTGGTCCCACGTGTACTCTG 209 215 1490 Antisense
GTGTACTCTGGCCTCAAGTCAAAAA 14 487 1505 Antisense
CGTCTGCGCTTTGCGATGAACCGTC 643 245 1531 Antisense
GAACCGTCGTGGAGTCAAACTGCCA 628 343 1548 Antisense
GACTTCGTTGATCATGCTGTACTCC 636 371 1609 Antisense
Sequence Source Affymetrix Proprietary Database