[Home] | [Total List]

[183770_at]

Description W02H5.2 /REP_DB=WormBase Gene ID /WP=CE21247 /TR=Q9N5C8 /GB=AAF60385.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 49
(1.2)
A 		63.9
(3)
A 		29
(-1.1)
A 		13.2
(-3)
A 		51
B 73.2
(3)
A 		29.6
(-1.9)
A 		19.5
(-3)
A 		51.7
(0.6)
A 		54
C 82.3
(3)
A 		68.8
(0.4)
A 		50.7
(-3)
A 		61.3
(-1)
A 		32
avr 68.2
(3) 		54.1
(0.6) 		33.1
(-3) 		42.1
(-1.5) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 7.4
(-2.6)
A 		9.1
(-2.3)
A 		38.1
(1.9)
A 		5.9
(-2.8)
A 		4.6
(-3)
A 		45.3
(3)
A 		41
B 36.4
(3)
A 		16.4
(-3)
A 		17
(-2.8)
A 		31.4
(1.5)
A 		23.2
(-1)
A 		27.1
(0.2)
A 		20
C 3.2
(-3)
A 		13.1
(-1.6)
A 		44.8
(3)
A 		6.5
(-2.5)
A 		3.7
(-2.9)
A 		11.8
(-1.8)
A 		42
avr 15.7
(-1.6) 		12.9
(-2.4) 		33.3
(3) 		14.6
(-1.9) 		10.5
(-3) 		28.1
(1.6) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 17.8
(3)
A 		13.9
(1.5)
A 		7.6
(-0.8)
A 		1.9
(-3)
A 		16
B 23.3
(3)
A 		7.3
(-2.1)
A 		4.5
(-3)
A 		11
(-0.9)
A 		19
C 27.3
(3)
A 		19.8
(0.4)
A 		17.7
(-0.4)
A 		10.3
(-3)
A 		17
avr 22.8
(3) 		13.7
(-0.6) 		9.9
(-2.1) 		7.7
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.4
(-3)
A 		3.2
(-1.9)
A 		8.3
(1.3)
A 		1.5
(-2.9)
A 		1.4
(-3)
A 		11
(3)
A 		10
B 12.6
(3)
A 		5.5
(-2)
A 		4.1
(-3)
A 		8.3
(-0)
A 		9.4
(0.7)
A 		10.1
(1.2)
A 		9
C 1.2
(-3)
A 		4
(-1.4)
A 		11.4
(3)
A 		1.3
(-2.9)
A 		1.2
(-3)
A 		3.9
(-1.4)
A 		10
avr 5.1
(-1.2) 		4.2
(-2.3) 		7.9
(2.5) 		3.7
(-3) 		4
(-2.6) 		8.3
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183770_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15102
Sequence Type Exemplar sequence
Representative Public ID W02H5.2 NCBI
Target Description W02H5.2 /REP_DB=WormBase Gene ID /WP=CE21247 /TR=Q9N5C8 /GB=AAF60385.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071321(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071321 NCBI Caenorhabditis elegans W02H5.2 (W02H5.2) mRNA, complete cds. 11/11 None
W02H5.2 ENSEMBL cdna:known chromosome:CEL140:V:2638548:2639276:1 gene:W02H5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022934 8/11 Cross Hyb Matching Probes None
GENEFINDER00000022938 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2638547-2639276(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02H5.2
Entrez Gene 189134 Entrez gene
SwissProt Q9N5C8 EMBL-EBI
WormBase CE21247 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503722 W02H5.2 [Caenorhabditis elegans] gb|AAF60385.1| Hypothetical protein W02H5.2 [Caenorhabditis elegans] 3.0E-74
blast CAE62529 Hypothetical protein CBG06638 [Caenorhabditis briggsae] 1.0E-26
Sequence
Target Sequence 
>C. ELEGANS:183770_AT
gactcctctcagacaacgttttattatatgttttcgcgaatattgcaaaatcgatcaatt
ttccgcattttcggctttgttttaatgtcggatccgttcgccccacaagcgaacactcgg
cagacagataacacctacttggcagcacttgaaaaacgtctaaaagccgtgaaggataag
aagaaaatcgattcaaagtcgattttaaaggacatcgaatcgctgaaaaacgatcaaatc
ttcaaacttttgtctcaacctgaacctgaacaatcatctgaagagcagaaattcgaagac
gacttcattacacaggacaaaccagtcaagcccagcctcatccggcagaaaatcgccccg
cacacgtgcgcgatcaataaaaacgagctcgcgcacattgtgaaattcgatttggcgcaa
aagcttcacgaattctacgggcagcttgacgaaagcttggaggatcgagaggagtcgcac
gagattcttcaagagcttcaggagttgggaaatgagctcgaaacggaacatccccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCCTCTCAGACAACGTTTTATT 210 373 25 Antisense
CAATTTTCCGCATTTTCGGCTTTGT 330 179 80 Antisense
GCTTTGTTTTAATGTCGGATCCGTT 30 281 98 Antisense
TAACACCTACTTGGCAGCACTTGAA 671 639 153 Antisense
ACTTTTGTCTCAACCTGAACCTGAA 398 101 270 Antisense
GAAGACGACTTCATTACACAGGACA 205 339 319 Antisense
ACAGGACAAACCAGTCAAGCCCAGC 229 107 336 Antisense
AGCCTCATCCGGCAGAAAATCGCCC 637 81 358 Antisense
CTTCACGAATTCTACGGGCAGCTTG 698 219 448 Antisense
GAGTCGCACGAGATTCTTCAAGAGC 92 401 496 Antisense
TGAGCTCGAAACGGAACATCCCCGG 126 569 537 Antisense
Sequence Source Affymetrix Proprietary Database