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[183768_at]

Description F20A1.5 /REP_DB=WormBase Gene ID /WP=CE07095 /TR=Q19609 /GB=AAA96125.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 23      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 87.8
(-0.9)
P 		54.3
(-2.4)
A 		42
(-3)
A 		170.8
(3)
P 		129
B 147.3
(3)
P 		56
(-1)
A 		11.2
(-3)
A 		72.2
(-0.3)
P 		136
C 132
(3)
P 		16.1
(-3)
A 		57.2
(-0.9)
A 		115.6
(2.2)
P 		116
avr 122.4
(3) 		42.1
(-2.6) 		36.8
(-3) 		119.5
(2.8) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 130.7
(2.2)
P 		144.1
(3)
P 		73.2
(-1.1)
A 		44.4
(-2.8)
A 		42.2
(-2.9)
A 		41.1
(-3)
A 		103
B 111.2
(2.9)
P 		68.6
(-1.3)
P 		111.9
(3)
P 		51.5
(-3)
A 		53.7
(-2.8)
P 		65.9
(-1.6)
P 		60
C 134.9
(3)
P 		86.1
(-0)
P 		38.6
(-3)
A 		49.2
(-2.3)
A 		63.3
(-1.5)
A 		61.8
(-1.6)
P 		96
avr 125.6
(3) 		99.6
(1) 		74.6
(-1) 		48.4
(-3) 		53.1
(-2.6) 		56.3
(-2.4) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 32
(3)
P 		11.8
(-2.8)
A 		11
(-3)
A 		25
(1)
P 		21
B 47
(3)
P 		13.8
(-1.5)
A 		2.6
(-3)
A 		15.4
(-1.3)
P 		44
C 43.7
(3)
P 		4.6
(-3)
A 		19.9
(-0.7)
A 		19.5
(-0.7)
P 		39
avr 40.9
(3) 		10.1
(-3) 		11.2
(-2.8) 		20
(-1.1) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 24.1
(-0.9)
P 		51.2
(3)
P 		15.9
(-2.1)
A 		11.3
(-2.8)
A 		12.7
(-2.6)
A 		10
(-3)
A 		41
B 38.7
(3)
P 		22.8
(-0.8)
P 		27.2
(0.2)
P 		13.7
(-3)
A 		21.8
(-1.1)
P 		24.6
(-0.4)
P 		25
C 50
(3)
P 		26.3
(-0.5)
P 		9.8
(-3)
A 		9.9
(-3)
A 		20.5
(-1.4)
A 		20.7
(-1.4)
P 		40
avr 37.6
(3) 		33.4
(2) 		17.6
(-1.6) 		11.6
(-3) 		18.3
(-1.5) 		18.4
(-1.4) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183768_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11318
Sequence Type Exemplar sequence
Representative Public ID F20A1.5 NCBI
Target Description F20A1.5 /REP_DB=WormBase Gene ID /WP=CE07095 /TR=Q19609 /GB=AAA96125.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072378(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072378 NCBI Caenorhabditis elegans F20A1.4 (F20A1.4) mRNA, complete cds. 11/11 None
GENEFINDER00000026810 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7021494:7024362:-1 11/11 None
F20A1.4 ENSEMBL cdna:known chromosome:CEL140:V:7021494:7024396:-1 gene:F20A1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7023412-7024363(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20A1.4
Entrez Gene 179086 Entrez gene
SwissProt Q5WRR3 EMBL-EBI
WormBase CE37634 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504779 F20A1.4 [Caenorhabditis elegans] gb|AAV28350.1| Hypothetical protein F20A1.4 [Caenorhabditis elegans] 0.0
blast T30034 hypothetical protein F20A1.4 - Caenorhabditis elegans 1.0E-156
blast CAE72038 Hypothetical protein CBG19120 [Caenorhabditis briggsae] 1.0E-69
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504779.2 13 20-42,62-81,83-102,112-129,156-178,188-210,223-245,260-282,295-317,327-349,358-380,395-417,424-446
F20A1.4 13 20-42,62-81,83-102,112-129,156-178,188-210,223-245,260-282,295-317,327-349,358-380,395-417,424-446
GENEFINDER00000026810 13 20-42,62-81,83-102,112-129,156-178,188-210,223-245,260-282,295-317,327-349,358-380,395-417,424-446
Sequence
Target Sequence 
>C. ELEGANS:183768_AT
tccgcccaatccttgtattattcttttggagccttgccagcttcacattctttctattga
ccttcacatttgagctgatgcaaatacatgttcaggattcaaatggattggatcagccgg
ctggaacatttcaagaccctcaaattctaattccatttttgctcatcccccttgtctgcc
taacagtgttctcacgaagtattccagttacgatttctacagcaataacaactttccttt
caatttgcatattatcatttctgtcaaggctcaatcattatctggatccagaccctgttc
acattgtggttattttacatgtcacaacagccaactcgattttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGCCCAATCCTTGTATTATTCTT 416 595 53 Antisense
TATTCTTTTGGAGCCTTGCCAGCTT 396 661 71 Antisense
CACATTCTTTCTATTGACCTTCACA 130 197 96 Antisense
TGACCTTCACATTTGAGCTGATGCA 65 571 110 Antisense
TTCTAATTCCATTTTTGCTCATCCC 664 691 197 Antisense
CCCTTGTCTGCCTAACAGTGTTCTC 107 259 221 Antisense
ATTCCAGTTACGATTTCTACAGCAA 475 7 253 Antisense
ACAGCAATAACAACTTTCCTTTCAA 59 109 271 Antisense
ATCATTTCTGTCAAGGCTCAATCAT 674 29 306 Antisense
ATCCAGACCCTGTTCACATTGTGGT 667 39 338 Antisense
GTCACAACAGCCAACTCGATTTTCT 231 465 373 Antisense
Sequence Source Affymetrix Proprietary Database