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[183767_at]

Description M02E1.1 /REP_DB=WormBase Gene ID /WP=CE12332 /TR=Q94290 /GB=AAB52659.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 56      4grp_high_8_8 > 10      6grp_highest_nonorm > 82      6grp_total > 57      4grp_total > 14      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 422
1 2 3 4 range
A 575
(2.5)
P 		264.5
(-2.3)
M 		217
(-3)
P 		605
(3)
P 		388
B 585.3
(3)
P 		301.9
(-2.8)
P 		290.6
(-3)
P 		534.3
(2)
P 		295
C 468.1
(-0)
P 		301.8
(-3)
P 		299.9
(-3)
P 		639
(3)
P 		339
avr 542.8
(2.1) 		289.4
(-2.6) 		269.2
(-3) 		592.8
(3) 		324

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 264
1 2 3 4 5 6 range
A 383.8
(1.7)
P 		362.5
(0.9)
P 		252.9
(-3)
P 		297.4
(-1.4)
P 		340.8
(0.1)
P 		421.5
(3)
P 		169
B 376.8
(1.2)
P 		392.5
(1.6)
P 		365.9
(0.9)
P 		283.6
(-1.3)
P 		218.2
(-3)
P 		445.6
(3)
P 		227
C 267.9
(-1.9)
P 		410.1
(1.4)
P 		316
(-0.8)
P 		354
(0.1)
P 		218.8
(-3)
P 		482.5
(3)
P 		264
avr 342.8
(-0.4) 		388.4
(1.1) 		311.6
(-1.4) 		311.7
(-1.4) 		259.3
(-3) 		449.9
(3) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 209.4
(3)
P 		57.4
(-3)
M 		56.7
(-3)
P 		88.6
(-1.7)
P 		153
B 186.6
(3)
P 		74.6
(-2.6)
P 		67.4
(-3)
P 		113.9
(-0.7)
P 		119
C 155
(3)
P 		86.8
(-3)
P 		104.5
(-1.4)
P 		107.7
(-1.2)
P 		68
avr 183.7
(3) 		72.9
(-3) 		76.2
(-2.8) 		103.4
(-1.3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 70.8
(-1.7)
P 		128.9
(3)
P 		55.1
(-3)
P 		75.4
(-1.3)
P 		102.9
(0.9)
P 		102.6
(0.9)
P 		74
B 131.1
(0.7)
P 		130.7
(0.7)
P 		88.9
(-2.1)
P 		75.1
(-3)
P 		88.6
(-2.1)
P 		166.2
(3)
P 		91
C 99.3
(-1.1)
P 		125.1
(0.6)
P 		80.4
(-2.4)
P 		71.2
(-3)
P 		70.8
(-3)
P 		161.5
(3)
P 		91
avr 100.4
(-0.7) 		128.2
(1.7) 		74.8
(-2.9) 		73.9
(-3) 		87.4
(-1.8) 		143.4
(3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183767_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18159
Sequence Type Exemplar sequence
Representative Public ID M02E1.1 NCBI
Target Description M02E1.1 /REP_DB=WormBase Gene ID /WP=CE12332 /TR=Q94290 /GB=AAB52659.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075686(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075686 NCBI Caenorhabditis elegans M02E1.1a (M02E1.1) mRNA, complete cds. 11/11 None
GENEFINDER00000036382 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:326115:333494:1 9/11 None
M02E1.1a ENSEMBL cdna:known chromosome:CEL140:X:325962:334587:1 gene:M02E1.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075687 2/11 Cross Hyb Matching Probes None
SNAP00000036380 8/11 Cross Hyb Matching Probes None
M02E1.1b.2 2/11 Cross Hyb Matching Probes A 
M02E1.1b.1 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180389 2 1 NM_075686 183767_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:325961-333687(+) 100.0 100.0
Public Domain and Genome References
Ensembl M02E1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM51499 Hypothetical protein M02E1.1a [Caenorhabditis elegans] ref|NP_508087.2| M02E1.1a [Caenorhabditis elegans] 0.0
blast T25836 hypothetical protein M02E1.1 - Caenorhabditis elegans 0.0
blast AAM51500 Hypothetical protein M02E1.1b [Caenorhabditis elegans] ref|NP_508088.2| M02E1.1b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:183767_AT
tagatcgtccgtatgctggggtttcggatggaaacacacttcgaatggcgacacctctac
cttctttcaatggtaggcctccatcggttgttcggcctagaacagcgttcgacatgaaca
taccttacggcactgattcgaattttattggagcaaaacaattcaaaaaaaatacgcttt
cggttgagatgacgaatgcaagacaacgagcgaacaagaaaaaggaaaaaatgaaagaag
tagcgatggctgagcaacatcgtcagatggcaagtacaccggtagcgtccaatattccaa
acattggaattccgaagattgaccctttggtgttgcaacagatgattctggcccagcaac
agttgttaaatcgaaatatgatggtcccacaacttcgccctaatgaagttcctatgttaa
atcatcagaatatcactcagcagctactagcacagttcaatatccgtcaaaacaacatgc
aattttctactccagctccatttccttcattttcaaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGATCGTCCGTATGCTGGGGTTTC 693 651 2615 Antisense
AACACACTTCGAATGGCGACACCTC 133 135 2647 Antisense
ACACCTCTACCTTCTTTCAATGGTA 91 109 2665 Antisense
CAATGGTAGGCCTCCATCGGTTGTT 545 157 2682 Antisense
GAACATACCTTACGGCACTGATTCG 145 351 2730 Antisense
GTACACCGGTAGCGTCCAATATTCC 495 459 2888 Antisense
GATTGACCCTTTGGTGTTGCAACAG 689 433 2931 Antisense
GATTCTGGCCCAGCAACAGTTGTTA 291 431 2958 Antisense
AATATGATGGTCCCACAACTTCGCC 663 173 2989 Antisense
CAACATGCAATTTTCTACTCCAGCT 353 189 3087 Antisense
GCTCCATTTCCTTCATTTTCAAATA 274 299 3109 Antisense
Sequence Source Affymetrix Proprietary Database