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[183766_at]

Description C06A5.1 /REP_DB=WormBase Gene ID /WP=CE07948 /TR=O01483 /GB=AAB52443.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 20      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 64.2
(0.7)
A 		31.7
(-3)
A 		57.8
(-0)
A 		84.2
(3)
A 		53
B 70.3
(3)
A 		59.2
(1.4)
A 		29.8
(-3)
A 		45.4
(-0.7)
A 		41
C 47.3
(-3)
A 		96
(-0.1)
A 		46.8
(-3)
A 		150.3
(3)
A 		104
avr 60.6
(-1) 		62.3
(-0.8) 		44.8
(-3) 		93.3
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 48.3
(0.7)
A 		42.4
(0.2)
A 		27.9
(-1.2)
A 		8.2
(-3)
A 		72.9
(3)
A 		16.4
(-2.2)
A 		65
B 40.4
(1.5)
A 		33.2
(0.4)
A 		16.8
(-2)
A 		10.1
(-3)
A 		50.3
(3)
A 		28.7
(-0.2)
A 		40
C 7.4
(-3)
A 		64.9
(3)
A 		13.2
(-2.4)
A 		14.2
(-2.3)
A 		26.2
(-1)
A 		29.7
(-0.7)
A 		58
avr 32
(0.3) 		46.8
(2.5) 		19.3
(-1.7) 		10.8
(-3) 		49.8
(3) 		24.9
(-0.8) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 23.4
(3)
A 		6.9
(-3)
A 		15.1
(-0)
A 		12.3
(-1)
A 		17
B 22.4
(3)
A 		14.6
(-0)
A 		6.9
(-3)
A 		9.7
(-1.9)
A 		16
C 15.7
(-3)
A 		27.6
(3)
A 		16.3
(-2.7)
A 		25.3
(1.8)
A 		12
avr 20.5
(3) 		16.4
(-0.2) 		12.8
(-3) 		15.8
(-0.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 8.9
(-0.9)
A 		15.1
(0.9)
A 		6.1
(-1.8)
A 		2.1
(-3)
A 		22
(3)
A 		4
(-2.4)
A 		20
B 14.1
(0.9)
A 		11.1
(-0.2)
A 		4.1
(-2.5)
A 		2.7
(-3)
A 		20.4
(3)
A 		10.7
(-0.3)
A 		18
C 2.7
(-3)
A 		19.8
(3)
A 		3.4
(-2.8)
A 		2.9
(-2.9)
A 		8.5
(-1)
A 		10
(-0.4)
A 		17
avr 8.6
(-0.5) 		15.3
(2.3) 		4.5
(-2.2) 		2.6
(-3) 		17
(3) 		8.2
(-0.7) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183766_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1212
Sequence Type Exemplar sequence
Representative Public ID C06A5.1 NCBI
Target Description C06A5.1 /REP_DB=WormBase Gene ID /WP=CE07948 /TR=O01483 /GB=AAB52443.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059338(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059338 NCBI Caenorhabditis elegans C06A5.1 (C06A5.1) mRNA, complete cds. 11/11 None
SNAP00000033233 ENSEMBL cdna:SNAP chromosome:CEL140:I:6027546:6030118:1 11/11 None
GENEFINDER00000033238 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6027847:6030118:1 11/11 None
C06A5.1 ENSEMBL cdna:known chromosome:CEL140:I:6020193:6030118:1 gene:C06A5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6020192-6030118(+) 99.47 100.0
Public Domain and Genome References
Gene Title
Ensembl C06A5.1
Entrez Gene 182280 Entrez gene
SwissProt O01483 EMBL-EBI
WormBase CE07948 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52443 Hypothetical protein C06A5.1 [Caenorhabditis elegans] ref|NP_491739.1| C06A5.1 [Caenorhabditis elegans] 0.0
blast CAE74371 Hypothetical protein CBG22096 [Caenorhabditis briggsae] 0.0
blast CAE74371 Hypothetical protein CBG22096 [Caenorhabditis briggsae] 1.0E-145
blast CAE74371 Hypothetical protein CBG22096 [Caenorhabditis briggsae] 1.0E-107
blast CAE74370 Hypothetical protein CBG22095 [Caenorhabditis briggsae] 6.0E-40
Sequence
Target Sequence 
>C. ELEGANS:183766_AT
atttcagcgaaagatcttcccgttccacttggacaacaaaatgatgaggatagtataaat
gcagaagatgttccagtgaaaagagaatggattgatacatcacatgcaatgacacgattc
gtatccctgctcagagagcatcctaactttttgaaaatgaaattcccagtgctagccaac
tacgtatcccgagtgaatgcgatgaatcgaaaagagttggctgaagagaatcgtgttggc
aaaatcgaattaattctgcaatcggtgattgttttgtgtccccatatggcaccagatgaa
atgagttctgtggatacagcattgtcgaattgtcttgaattctatgagaaacatattgat
gaaggaggattcggaattaaagaacaaactgcttttgccgaattgactattcgcgcttgc
gccgaatatcttaatcatagttttgttgaggcgcgttcatttcttcgtgacaaccgtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCAGCGAAAGATCTTCCCGTTC 519 13 5242 Antisense
AATGACACGATTCGTATCCCTGCTC 195 163 5349 Antisense
GCTCAGAGAGCATCCTAACTTTTTG 503 299 5370 Antisense
TGAAATTCCCAGTGCTAGCCAACTA 204 571 5399 Antisense
AGCCAACTACGTATCCCGAGTGAAT 471 81 5415 Antisense
AATCGGTGATTGTTTTGTGTCCCCA 441 169 5501 Antisense
GTGTCCCCATATGGCACCAGATGAA 435 487 5517 Antisense
AACTGCTTTTGCCGAATTGACTATT 687 139 5628 Antisense
GACTATTCGCGCTTGCGCCGAATAT 155 373 5646 Antisense
TTTGTTGAGGCGCGTTCATTTCTTC 696 667 5683 Antisense
TTCATTTCTTCGTGACAACCGTCAA 90 687 5697 Antisense
Sequence Source Affymetrix Proprietary Database