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[183765_s_at]

Description F34D10.4 /REP_DB=WormBase Gene ID /WP=CE17770 /TR=Q19994 /GB=CAA84318.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 91      6grp_total > 88      4grp_total > 12      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 283
1 2 3 4 range
A 373.3
(-0.6)
P 		320.9
(-2)
P 		287.1
(-3)
P 		499.1
(3)
P 		212
B 379.3
(0.3)
P 		368
(-0.1)
P 		277.1
(-3)
P 		465.3
(3)
P 		188
C 419.3
(-0.3)
P 		307
(-3)
P 		325.4
(-2.6)
P 		560
(3)
P 		253
avr 390.6
(-0.3) 		332
(-2) 		296.5
(-3) 		508.1
(3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 151.7
(-3)
P 		210.3
(-1.7)
P 		174.9
(-2.5)
P 		175.5
(-2.5)
P 		266.8
(-0.4)
P 		417.8
(3)
P 		266
B 127.5
(-3)
P 		237.1
(-0.7)
P 		173.5
(-2)
P 		166.9
(-2.2)
P 		273.2
(0)
P 		414.6
(3)
P 		287
C 166.9
(-3)
P 		181.8
(-2.6)
P 		178.7
(-2.7)
P 		185
(-2.5)
P 		370.6
(3)
P 		351.2
(2.4)
P 		204
avr 148.7
(-3) 		209.7
(-1.5) 		175.7
(-2.3) 		175.8
(-2.3) 		303.5
(0.8) 		394.5
(3) 		246
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 135.9
(3)
P 		69.7
(-3)
P 		75.1
(-2.5)
P 		73.1
(-2.7)
P 		66
B 121
(3)
P 		90.9
(-0.2)
P 		64.2
(-3)
P 		99.2
(0.7)
P 		57
C 138.8
(3)
P 		88.3
(-3)
P 		113.4
(-0)
P 		94.4
(-2.3)
P 		51
avr 131.9
(3) 		83
(-3) 		84.2
(-2.9) 		88.9
(-2.3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 28
(-3)
P 		74.8
(0.8)
P 		38.1
(-2.2)
P 		44.5
(-1.7)
P 		80.5
(1.3)
P 		101.7
(3)
P 		74
B 44.4
(-2.9)
P 		78.9
(-1)
P 		42.1
(-3)
P 		44.2
(-2.9)
P 		111
(0.7)
P 		154.6
(3)
P 		113
C 61.8
(-1.2)
P 		55.5
(-1.7)
P 		45.5
(-2.4)
P 		37.2
(-3)
P 		119.9
(3)
P 		117.6
(2.8)
P 		83
avr 44.7
(-2.8) 		69.7
(-1) 		41.9
(-3) 		42
(-3) 		103.8
(1.5) 		124.6
(3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183765_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7221
Sequence Type Exemplar sequence
Representative Public ID F34D10.4 NCBI
Target Description F34D10.4 /REP_DB=WormBase Gene ID /WP=CE17770 /TR=Q19994 /GB=CAA84318.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065357(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065357 NCBI Caenorhabditis elegans F34D10.4 (F34D10.4) mRNA, complete cds. 11/11 None
SNAP00000033686 ENSEMBL cdna:SNAP chromosome:CEL140:III:3736602:3739350:1 11/11 None
GENEFINDER00000033692 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3736602:3739350:1 11/11 None
F34D10.4.1 ENSEMBL cdna:known chromosome:CEL140:III:3736578:3739730:1 gene:F34D10.4 11/11 None
F34D10.4.2 ENSEMBL cdna:known chromosome:CEL140:III:3736580:3739730:1 gene:F34D10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058517 1/11 Cross Hyb Matching Probes A 
SNAP00000004336 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004342 1/11 Cross Hyb Matching Probes None
Y20F4.4 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3736601-3739350(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F34D10.4
Entrez Gene 175484 Entrez gene
SwissProt Q19994 EMBL-EBI
WormBase CE17770 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84318 Hypothetical protein F34D10.4 [Caenorhabditis elegans] ref|NP_497758.1| F34D10.4 [Caenorhabditis elegans] 0.0
blast NP_490918 Y20F4.4 [Caenorhabditis elegans] gb|AAL00866.2| Hypothetical protein Y20F4.4 [Caenorhabditis elegans] 1.0E-148
Sequence
Target Sequence 
>C. ELEGANS:183765_S_AT
agaactgctgttggctatgcgggcactcgtaataggagtcctctgcgagaagccgatgct
gaagagattgcagcgacggaagcgctaaaaaaccgattcgcagtgaaaagcagaggaacc
gcaaaagccaaagcaaattcaaaccgcggagctgcacttcttgagtcaatcgagccaacc
aatcgaaaaatcgaaacagcggaggagcgggaaaagaagcagaacgatttatatttggaa
aaaatgagaaagattagagaaaagcaacgtctggaacaagaaaagatagacgatgtggtt
gtcgattcagggaatcttcctacgattgctccaaatgctgccggaactccaccaccgcag
tcggtcgccgccatgctggagccgaaggaagagtctgaagaagacgaaccgtcgacctcc
gcaagtgttccttttcaaagaaggatgaactctcctcaaactcatgcgacaagctacgcg
aggcgcagtgatggaaagcgtcacccatcgaaatcgcgaagctccagggatgaccgagcc
aataggcgtgaccgagatcgggattctgacggacgctgtggagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAACTGCTGTTGGCTATGCGGGCA 653 73 1462 Antisense
ATAGGAGTCCTCTGCGAGAAGCCGA 378 19 1493 Antisense
CGGAGCTGCACTTCTTGAGTCAATC 445 243 1608 Antisense
ATCTTCCTACGATTGCTCCAAATGC 466 31 1775 Antisense
GAAGAAGACGAACCGTCGACCTCCG 605 337 1858 Antisense
CTCCGCAAGTGTTCCTTTTCAAAGA 588 233 1878 Antisense
TCTCCTCAAACTCATGCGACAAGCT 614 609 1912 Antisense
GACAAGCTACGCGAGGCGCAGTGAT 476 365 1929 Antisense
ATCGCGAAGCTCCAGGGATGACCGA 597 37 1974 Antisense
GACCGAGCCAATAGGCGTGACCGAG 82 381 1993 Antisense
GGATTCTGACGGACGCTGTGGAGAT 4 509 2022 Antisense
Sequence Source Affymetrix Proprietary Database