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[183763_at]

Description T12B3.4 /REP_DB=WormBase Gene ID /WP=CE21179 /TR=Q9UAX1 /GB=AAD14738.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 63      4grp_high_8_8 > 27      6grp_highest_nonorm > 71      6grp_total > 26      4grp_total > 36      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 284.5
(2)
P 		219.4
(-1.4)
P 		188
(-3)
P 		303.2
(3)
P 		115
B 294
(1.8)
P 		285.9
(0.5)
P 		264.3
(-3)
P 		301.4
(3)
P 		37
C 286.5
(-0.2)
P 		354.6
(3)
P 		226.1
(-3)
P 		231.4
(-2.8)
P 		129
avr 288.3
(3) 		286.6
(2.8) 		226.1
(-3) 		278.7
(2.1) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 417.7
(3)
P 		236.9
(-2.6)
P 		361.6
(1.3)
P 		223.6
(-3)
P 		352.4
(1)
P 		263.6
(-1.8)
P 		194
B 336.1
(0.1)
P 		369.1
(3)
P 		331.1
(-0.3)
P 		299.7
(-3)
P 		326.2
(-0.7)
P 		301.8
(-2.8)
P 		69
C 343.7
(0.1)
P 		445.4
(3)
P 		234.2
(-3)
P 		311.9
(-0.8)
P 		234.3
(-3)
P 		375
(1)
P 		211
avr 365.8
(3) 		350.5
(1.9) 		309
(-0.9) 		278.4
(-3) 		304.3
(-1.2) 		313.5
(-0.6) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 103.6
(3)
P 		47.6
(-2.7)
P 		49.1
(-2.5)
P 		44.4
(-3)
P 		59
B 93.8
(3)
P 		70.6
(-1.3)
P 		61.2
(-3)
P 		64.2
(-2.4)
P 		33
C 94.8
(2.3)
P 		101.9
(3)
P 		78.8
(0.8)
P 		39
(-3)
P 		63
avr 97.4
(3) 		73.4
(0) 		63
(-1.3) 		49.2
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 77
(-0.5)
P 		84.3
(0.3)
P 		78.8
(-0.3)
P 		56.7
(-3)
P 		106.3
(3)
P 		64.2
(-2.1)
P 		50
B 117
(1.2)
P 		122.9
(1.9)
P 		80.4
(-2.9)
P 		79.4
(-3)
P 		132.5
(3)
P 		112.5
(0.7)
P 		53
C 127.4
(2.3)
P 		135.9
(3)
P 		59.6
(-3)
P 		62.7
(-2.8)
P 		75.8
(-1.7)
P 		125.5
(2.2)
P 		76
avr 107.1
(2.1) 		114.4
(3) 		72.9
(-2.2) 		66.3
(-3) 		104.9
(1.8) 		100.7
(1.3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183763_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9465
Sequence Type Exemplar sequence
Representative Public ID T12B3.4 NCBI
Target Description T12B3.4 /REP_DB=WormBase Gene ID /WP=CE21179 /TR=Q9UAX1 /GB=AAD14738.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068778(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068778 NCBI Caenorhabditis elegans T12B3.4 (T12B3.4) mRNA, complete cds. 11/11 None
SNAP00000023941 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7385064:7386935:-1 11/11 None
GENEFINDER00000023945 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7385064:7388910:-1 11/11 None
T12B3.4 ENSEMBL cdna:known chromosome:CEL140:IV:7385064:7388922:-1 gene:T12B3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7385069-7388916(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T12B3.4
Entrez Gene 177511 Entrez gene
SwissProt Q9UAX1 EMBL-EBI
WormBase CE21179 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586222_AT similar to MOB1, Mps One Binder kinase activator-like 2B cfa
CANINE_2:CFA.15086.1.A1_AT similar to MOB1, Mps One Binder kinase activator-like 2B cfa
CANINE_2:CFAAFFX.3467.1.S1_AT similar to MOB1, Mps One Binder kinase activator-like 2B cfa
DROSGENOME1:146134_AT dm
DROSOPHILA_2:1629158_AT dm
CHICKEN:GGAAFFX.1219.1.S1_AT similar to Mob3b protein gga
HG-U133_PLUS_2:219265_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) hs
HG-U133A:219265_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) hs
HG-U133A_2:219265_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) hs
HU35KSUBB:RC_N72128_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) hs
HU35KSUBC:RC_H12117_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) hs
HU35KSUBD:RC_R32860_S_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) hs
U133_X3P:G13376100_3P_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) hs
U133_X3P:HS2.352658.1.S1_3P_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) hs
U133_X3P:HS.76605.0.A1_3P_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) hs
U133_X3P:HS.293849.0.A1_3P_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) hs
HG-U133_PLUS_2:1563521_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) hs
HG-U133_PLUS_2:226844_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) hs
HG-U133B:226844_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) hs
HG-U133_PLUS_2:229568_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) hs
HG-U133B:229568_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) hs
HG-U95C:60010_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) hs
HG-U95C:64747_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) hs
HG-U95E:88950_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) hs
HG-U95E:86490_R_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) hs
MOUSE430A_2:1425669_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) mm
MOUSE430_2:1425669_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) mm
MOE430A:1425669_AT MOB1, Mps One Binder kinase activator-like 2B (yeast) mm
RAE230B:1377694_AT Similar to Mob3b protein rn
RAT230_2:1377694_AT Similar to Mob3b protein rn
RG-U34B:RC_AA944537_AT Similar to Mob3b protein rn
Protein Similarities
Method ID Description E-Value
blast AAD14738 Hypothetical protein T12B3.4 [Caenorhabditis elegans] ref|NP_501179.1| T12B3.4 [Caenorhabditis elegans] 1.0E-164
blast CAE61872 Hypothetical protein CBG05852 [Caenorhabditis briggsae] 1.0E-156
blast AAD14738 Hypothetical protein T12B3.4 [Caenorhabditis elegans] ref|NP_501179.1| T12B3.4 [Caenorhabditis elegans] 1.0E-150
blast CAE61872 Hypothetical protein CBG05852 [Caenorhabditis briggsae] 1.0E-143
blast XP_396081 PREDICTED: similar to ENSANGP00000025093 [Apis mellifera] 2.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR005301 EMBL-EBI Mob1/phocein family 6.0E-123
Pfam IPR005301 EMBL-EBI Mob1/phocein family 6.0E-123
Sequence
Target Sequence 
>C. ELEGANS:183763_AT
ctccgctacagtcttcacaaacaagcagaagcaactcttcattcgggtgtagatcttcgt
catgctgtcaaactgccaccaagtgagaactttgatgattggctggctgtacatactgtt
gactttttcaatcgaattaatttgatgtatggaacgatttctgatgtatgcactcgtgaa
tcttgcccaactatgtgtggaggatcccgttatgaatatttgtggcaggatggtattgag
tataaaaaaccgacaagactccctgctccgcagtacatgcagctgctaatggattggatt
gaagttcgcattaatgatgagcacatcttcccatcaagcacaaatgtatcatttccaaaa
gatttccgtcaaatttgcaaaaagattctcactcgcttgttccgtgtcttcgtgcacgtc
tacattcatcatttcgatcggattcgagaattgggtgctgaaccacacgccaataccctt
tataaacatttttacttttttgtgactgaatatggaatggtgtccactaaagaattggag
gcattgaaagacatgactgaacgtcttctggagccatcaaatcgccgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCGCTACAGTCTTCACAAACAAG 585 233 268 Antisense
GAAGCAACTCTTCATTCGGGTGTAG 683 339 295 Antisense
TTCGGGTGTAGATCTTCGTCATGCT 391 693 309 Antisense
CTTCGTCATGCTGTCAAACTGCCAC 537 219 322 Antisense
GGCTGGCTGTACATACTGTTGACTT 327 541 368 Antisense
TATGCACTCGTGAATCTTGCCCAAC 248 657 434 Antisense
TAAAAAACCGACAAGACTCCCTGCT 87 639 510 Antisense
CTGCTCCGCAGTACATGCAGCTGCT 144 237 530 Antisense
AAAAAGATTCTCACTCGCTTGTTCC 561 129 646 Antisense
AATTGGGTGCTGAACCACACGCCAA 205 177 716 Antisense
TTCTGGAGCCATCAAATCGCCGAGC 23 689 833 Antisense
Sequence Source Affymetrix Proprietary Database