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[183762_at]

Description R02F2.7 /REP_DB=WormBase Gene ID /WP=CE00771 /TR=Q21649 /GB=AAA50723.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 62      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 537
1 2 3 4 range
A 456.3
(2.6)
P 		307.1
(-0.2)
P 		478.2
(3)
A 		158.9
(-3)
A 		319
B 648.8
(3)
P 		399.3
(-0.3)
M 		490.2
(0.9)
P 		191.8
(-3)
A 		457
C 599.7
(3)
P 		394.7
(0.5)
A 		460.5
(1.3)
P 		111.4
(-3)
A 		488
avr 568.3
(3) 		367
(0.1) 		476.3
(1.7) 		154
(-3) 		414

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 391
1 2 3 4 5 6 range
A 281.4
(0.3)
A 		208.5
(-2.6)
A 		207.3
(-2.6)
A 		198.5
(-3)
A 		234.9
(-1.5)
M 		348.5
(3)
P 		150
B 147.5
(-3)
A 		184.7
(-1.7)
M 		154
(-2.8)
P 		230.8
(-0.1)
A 		287.8
(1.9)
P 		317.8
(3)
P 		170
C 179.5
(-2)
P 		194.6
(-1.8)
M 		130.9
(-2.8)
A 		117.1
(-3)
A 		311.2
(-0)
P 		508.4
(3)
P 		391
avr 202.8
(-2) 		195.9
(-2.2) 		164.1
(-3) 		182.1
(-2.5) 		278
(0) 		391.6
(3) 		228
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 166.2
(3)
P 		66.7
(-1.2)
P 		125
(1.3)
A 		23.3
(-3)
A 		143
B 206.9
(3)
P 		98.6
(-0.9)
M 		113.6
(-0.4)
P 		40.9
(-3)
A 		166
C 198.5
(3)
P 		113.5
(0.2)
A 		160.5
(1.7)
P 		18.8
(-3)
A 		180
avr 190.5
(3) 		92.9
(-0.6) 		133
(0.9) 		27.7
(-3) 		163

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 51.9
(-2)
A 		74.2
(1.4)
A 		45.1
(-3)
A 		50.4
(-2.2)
A 		70.9
(0.9)
M 		84.9
(3)
P 		40
B 51.3
(-2)
A 		61.5
(-1.2)
M 		37.4
(-3)
P 		61.1
(-1.2)
A 		116.9
(2.9)
P 		118.5
(3)
P 		81
C 66.5
(-1.2)
P 		59.4
(-1.5)
M 		33.3
(-2.6)
A 		23.5
(-3)
A 		100.7
(0.2)
P 		170.2
(3)
P 		147
avr 56.6
(-1.7) 		65
(-1.2) 		38.6
(-3) 		45
(-2.6) 		96.2
(1) 		124.5
(3) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183762_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6172
Sequence Type Exemplar sequence
Representative Public ID R02F2.7 NCBI
Target Description R02F2.7 /REP_DB=WormBase Gene ID /WP=CE00771 /TR=Q21649 /GB=AAA50723.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065769(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065769 NCBI Caenorhabditis elegans R02F2.7 (R02F2.7) mRNA, complete cds. 11/11 A 
SNAP00000033069 ENSEMBL cdna:SNAP chromosome:CEL140:III:5480353:5483729:-1 11/11 None
GENEFINDER00000033081 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5480353:5483729:-1 11/11 None
R02F2.7 ENSEMBL cdna:known chromosome:CEL140:III:5480269:5483740:-1 gene:R02F2.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5481343-5483728(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R02F2.7
Entrez Gene 175754 Entrez gene
SwissProt Q21649 EMBL-EBI
WormBase CE29818 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50723 Hypothetical protein R02F2.7 [Caenorhabditis elegans] ref|NP_498170.2| R02F2.7 [Caenorhabditis elegans] 0.0
blast T16655 hypothetical protein R02F2.7 - Caenorhabditis elegans 0.0
blast CAE61361 Hypothetical protein CBG05202 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:183762_AT
ggaagctgctccagtcaaatttgtgaatagaaccgccgcggatgtcgctgagaagctccg
agagccggaatttgcagtggcagaagccttaagcttgctccaaggagttcatacagcgga
gacgaaaaaggaagtctttgattctgttgtaaaattcgtcgaagagattcctggagccga
gagcattgacgagatgaagcttttcaagttgataattgaaatgtatggtggaagtcaact
ggaatcattagctgttcaagtagtgttttcacgaattgctgccgacggttggactgaaat
ggatcgggctccgggaaccgagaaatctgatgaatcatggtttacagtacttgtggagac
gattgatctgcttgatatagcaatgaaatcggcgaagaattcagtgctaaaatcattcac
tgcacttttctgtcaactttttagccaagttttgaagaattctcaaaaattcgtgaggaa
tagtctgaacgcggtcgcgtcgcgtacactttcgcctgaaatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGCTGCTCCAGTCAAATTTGTG 232 531 1197 Antisense
ATAGAACCGCCGCGGATGTCGCTGA 686 17 1223 Antisense
ATGTCGCTGAGAAGCTCCGAGAGCC 261 49 1238 Antisense
GGCAGAAGCCTTAAGCTTGCTCCAA 702 535 1275 Antisense
GAGATTCCTGGAGCCGAGAGCATTG 114 397 1360 Antisense
TCACGAATTGCTGCCGACGGTTGGA 282 627 1465 Antisense
GGACTGAAATGGATCGGGCTCCGGG 439 497 1487 Antisense
AAATCATTCACTGCACTTTTCTGTC 487 117 1606 Antisense
GCACTTTTCTGTCAACTTTTTAGCC 153 315 1618 Antisense
TAGTCTGAACGCGGTCGCGTCGCGT 374 645 1677 Antisense
TCGCGTACACTTTCGCCTGAAATGG 645 599 1696 Antisense
Sequence Source Affymetrix Proprietary Database