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[183761_at]

Description M03C11.6 /REP_DB=WormBase Gene ID /WP=CE03497 /TR=Q21485 /GB=CAA88956.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 01      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 53.3
(-2.2)
A 		74.7
(-0.6)
A 		42.1
(-3)
A 		123.2
(3)
A 		81
B 52.2
(-1.4)
A 		27.7
(-3)
A 		82.2
(0.6)
A 		119
(3)
P 		91
C 77.3
(0)
A 		39.3
(-3)
A 		62.1
(-1.2)
M 		115
(3)
P 		76
avr 60.9
(-1.9) 		47.2
(-3) 		62.1
(-1.8) 		119.1
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 51.1
(-2.4)
A 		49.3
(-2.5)
A 		68.6
(-1.5)
A 		38.4
(-3)
A 		157.4
(3)
P 		97.8
(-0)
P 		119
B 72.4
(-3)
A 		84.9
(-2.1)
M 		73.7
(-2.9)
A 		76.5
(-2.7)
A 		156.2
(3)
P 		153.9
(2.8)
P 		84
C 45.4
(-3)
P 		63
(-1.7)
A 		96.6
(0.8)
A 		125.2
(3)
P 		99.7
(1.1)
P 		88.6
(0.2)
P 		80
avr 56.3
(-3) 		65.7
(-2.3) 		79.6
(-1.3) 		80
(-1.3) 		137.8
(3) 		113.4
(1.2) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 19.4
(3)
A 		16.2
(0.7)
A 		11
(-3)
A 		18
(2)
A 		8
B 16.6
(0.1)
A 		6.9
(-3)
A 		19.1
(1)
A 		25.4
(3)
P 		19
C 25.6
(3)
A 		11.3
(-3)
A 		21.6
(1.3)
M 		19.4
(0.4)
P 		14
avr 20.5
(2.7) 		11.5
(-3) 		17.2
(0.6) 		20.9
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 9.4
(-3)
A 		17.5
(-1.7)
A 		14.9
(-2.1)
A 		9.7
(-3)
A 		47.5
(3)
P 		23.8
(-0.7)
P 		38
B 25.2
(-2)
A 		28.3
(-1.6)
M 		17.9
(-3)
A 		20.3
(-2.7)
A 		63.4
(3)
P 		57.4
(2.2)
P 		46
C 16.8
(-3)
P 		19.2
(-2.1)
A 		24.6
(0)
A 		25.2
(0.3)
P 		32.3
(3)
P 		29.7
(2)
P 		16
avr 17.1
(-3) 		21.7
(-2.1) 		19.1
(-2.6) 		18.4
(-2.7) 		47.7
(3) 		37
(0.9) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183761_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7288
Sequence Type Exemplar sequence
Representative Public ID M03C11.6 NCBI
Target Description M03C11.6 /REP_DB=WormBase Gene ID /WP=CE03497 /TR=Q21485 /GB=CAA88956.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066898(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066898 NCBI Caenorhabditis elegans M03C11.6 (M03C11.6) mRNA, complete cds. 9/11 None
SNAP00000000519 ENSEMBL cdna:SNAP chromosome:CEL140:III:10421677:10423874:-1 9/11 None
GENEFINDER00000000558 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10421677:10423874:-1 10/11 None
M03C11.6 ENSEMBL cdna:known chromosome:CEL140:III:10421677:10423874:-1 gene:M03C11.6 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10421832-10423396(-) 98.58 100.0
Public Domain and Genome References
Gene Title
Ensembl M03C11.6
Entrez Gene 187420 Entrez gene
SwissProt Q21485 EMBL-EBI
WormBase CE37782 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88956 Hypothetical protein M03C11.6 [Caenorhabditis elegans] ref|NP_499299.2| M03C11.6 [Caenorhabditis elegans] 1.0E-168
blast CAA88956 Hypothetical protein M03C11.6 [Caenorhabditis elegans] ref|NP_499299.2| M03C11.6 [Caenorhabditis elegans] 1.0E-165
blast CAE71472 Hypothetical protein CBG18390 [Caenorhabditis briggsae] 2.0E-61
blast CAE71472 Hypothetical protein CBG18390 [Caenorhabditis briggsae] 2.0E-59
Sequence
Target Sequence 
>C. ELEGANS:183761_AT
gttttcacgactttactcttaactgtgaattatcgattccaatcactgaaaatcagattt
tttccattgattttatcgattcttcccgtttcgaacgccacgtaatcaccagattcgaag
tcaaaaatcgattggaaactgatattttatcaatccaggcgtcaattggcattccgaata
cattgattcgatggactttgtttgaaaattcacattctccaaatatcctgcaaagtatca
gaccgaattcgacagtagttgtgtgcttggcaattccattttcggcgtttttggccagtg
acaccgtaaatctcattttcacaggaaacctcgttccaagcaaaaggctactaatccact
cgaattatccaatcactgctcactgtgctccaccgttttcctgtgccaattgttccggat
tttgccacatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTCACGACTTTACTCTTAACTG 649 447 44 Antisense
CGAACGCCACGTAATCACCAGATTC 269 253 135 Antisense
ATCCAGGCGTCAATTGGCATTCCGA 415 39 196 Antisense
TTCACATTCTCCAAATATCCTGCAA 212 687 252 Antisense
AGTTGTGTGCTTGGCAATTCCATTT 515 65 300 Antisense
TTCGGCGTTTTTGGCCAGTGACACC 323 695 324 Antisense
GACACCGTAAATCTCATTTTCACAG 570 365 343 Antisense
AAAAGGCTACTAATCCACTCGAATT 120 131 385 Antisense
TTATCCAATCACTGCTCACTGTGCT 646 679 408 Antisense
GTTTTCCTGTGCCAATTGTTCCGGA 415 447 438 Antisense
CAATTGTTCCGGATTTTGCCACATT 691 179 450 Antisense
Sequence Source Affymetrix Proprietary Database