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[183759_at]

Description Y38F1A.9 /REP_DB=WormBase Gene ID /WP=CE21614 /TR=Q9XWM1 /GB=CAA21634.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 77      6grp_total > 29      4grp_total > 50      6grp_cgc > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2133
1 2 3 4 range
A 356.3
(-2.8)
P 		2409.1
(3)
P 		1573.1
(0.6)
P 		276.1
(-3)
P 		2133
B 415.6
(-2.7)
P 		2049.6
(3)
P 		1969
(2.7)
P 		317.2
(-3)
P 		1732
C 470
(-2.4)
P 		1939.5
(3)
P 		1684.2
(2.1)
P 		319.6
(-3)
P 		1620
avr 414
(-2.6) 		2132.7
(3) 		1742.1
(1.7) 		304.3
(-3) 		1828

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 624
1 2 3 4 5 6 range
A 1500.3
(3)
P 		1215.8
(-1.1)
P 		1229.7
(-0.9)
P 		1247.1
(-0.7)
P 		1463.9
(2.5)
P 		1087.9
(-3)
P 		412
B 1409.3
(0.5)
P 		1364.9
(-0.2)
P 		1270.5
(-1.4)
P 		1345.6
(-0.4)
P 		1596.5
(3)
P 		1155.6
(-3)
P 		441
C 1285.1
(0.7)
P 		1476.2
(3)
P 		972.6
(-3)
P 		1418.3
(2.3)
P 		1088.8
(-1.6)
P 		1287.4
(0.8)
P 		504
avr 1398.2
(3) 		1352.3
(1.9) 		1157.6
(-3) 		1337
(1.5) 		1383.1
(2.6) 		1177
(-2.5) 		241
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 547
1 2 3 4 range
A 129.7
(-1.9)
P 		523
(3)
P 		411.2
(1.6)
P 		40.4
(-3)
P 		483
B 132.5
(-2.1)
P 		506.2
(3)
P 		456.3
(2.3)
P 		67.6
(-3)
P 		439
C 155.6
(-1.9)
P 		557.6
(2.7)
P 		587
(3)
P 		53.9
(-3)
P 		533
avr 139.3
(-1.9) 		528.9
(3) 		484.8
(2.4) 		54
(-3) 		475

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 401
1 2 3 4 5 6 range
A 276.6
(-2.6)
P 		432.4
(2.7)
P 		267.8
(-2.9)
P 		316.3
(-1.3)
P 		441.7
(3)
P 		264.9
(-3)
P 		177
B 490.4
(0.2)
P 		454.3
(-0.4)
P 		308.5
(-3)
P 		356.4
(-2.2)
P 		648.7
(3)
P 		430.9
(-0.8)
P 		340
C 476.3
(3)
P 		450.4
(2.3)
P 		247.5
(-3)
P 		285.2
(-2)
P 		352.3
(-0.3)
P 		431
(1.8)
P 		229
avr 414.4
(1.1) 		445.7
(2) 		274.6
(-3) 		319.3
(-1.7) 		480.9
(3) 		375.6
(-0.1) 		206
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183759_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2670
Sequence Type Exemplar sequence
Representative Public ID Y38F1A.9 NCBI
Target Description Y38F1A.9 /REP_DB=WormBase Gene ID /WP=CE21614 /TR=Q9XWM1 /GB=CAA21634.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064366(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064366 NCBI Caenorhabditis elegans One IG domain family member (oig-2) (oig-2) mRNA, complete cds. 11/11 None
SNAP00000020286 ENSEMBL cdna:SNAP chromosome:CEL140:II:13006556:13008060:-1 11/11 None
GENEFINDER00000020299 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13006556:13008060:-1 11/11 None
Y38F1A.9 ENSEMBL cdna:known chromosome:CEL140:II:13006556:13008060:-1 gene:Y38F1A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13006552-13008057(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol oig-2
Ensembl Y38F1A.9
Entrez Gene 189675 Entrez gene
SwissProt Q9XWM1 EMBL-EBI
WormBase CE21614 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21634 Hypothetical protein Y38F1A.9 [Caenorhabditis elegans] ref|NP_496767.1| One IG domain family member (oig-2) [Caenorhabditis elegans] 2.0E-58
blast CAE59409 Hypothetical protein CBG02773 [Caenorhabditis briggsae] 5.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.0E-5
Sequence
Target Sequence 
>C. ELEGANS:183759_AT
ggctccgtttttcgagaaagctccatcgcttatcattgctccagacggatcagttctgtt
cgaatgcatctgtaatgcgaatccacaaccaacagttaaatggtttttgaaagacaaaga
gctgactggtgatcgttacgtgtcaaagatcaagaagatggttggcaagttcacagttac
actgcatatcaagaaccctacccaagaggaccaaggagtttacaaagtgactgctacaaa
cacccatggctcacactccgttgagcagcagtacatctaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTCCGTTTTTCGAGAAAGCTCCA 691 539 21 Antisense
AAAGCTCCATCGCTTATCATTGCTC 550 123 37 Antisense
ATCATTGCTCCAGACGGATCAGTTC 700 29 52 Antisense
GGATCAGTTCTGTTCGAATGCATCT 530 511 67 Antisense
GTAATGCGAATCCACAACCAACAGT 83 463 92 Antisense
GAGCTGACTGGTGATCGTTACGTGT 398 387 139 Antisense
GATGGTTGGCAAGTTCACAGTTACA 289 405 177 Antisense
TGCATATCAAGAACCCTACCCAAGA 665 575 203 Antisense
AAGTGACTGCTACAAACACCCATGG 395 159 245 Antisense
CCATGGCTCACACTCCGTTGAGCAG 54 273 264 Antisense
TCCGTTGAGCAGCAGTACATCTACA 286 595 277 Antisense
Sequence Source Affymetrix Proprietary Database