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[183758_s_at] 7TM chemoreceptor, srt family /// 7TM chemoreceptor, srt family

Description F47D2.1 /REP_DB=WormBase Gene ID /WP=CE10686 /TR=Q22988 /GB=AAG24109.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 31      6grp_total > 43      4grp_total > 11      6grp_cgc > 90      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 98.7
(-3)
A 		99.3
(-3)
A 		115.2
(-2)
A 		201.9
(3)
P 		103
B 110.9
(-3)
P 		143.6
(0)
A 		120.2
(-2.1)
A 		175.8
(3)
P 		65
C 168.4
(3)
P 		117.6
(-1)
A 		93.1
(-3)
A 		162.8
(2.6)
P 		75
avr 126
(-1.6) 		120.2
(-2.1) 		109.5
(-3) 		180.2
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 151.4
(2.7)
P 		64.2
(-3)
A 		139.5
(1.9)
P 		127.4
(1.1)
P 		155.9
(3)
P 		98.3
(-0.8)
A 		92
B 118
(3)
P 		110.5
(-0.6)
P 		109.2
(-1.3)
A 		105.6
(-3)
P 		109.6
(-1.1)
P 		105.8
(-2.9)
P 		12
C 119.5
(-0.5)
A 		159.6
(3)
P 		147.1
(1.9)
P 		90.3
(-3)
P 		125.2
(0)
P 		128.9
(0.3)
M 		69
avr 129.6
(2.4) 		111.4
(-2.1) 		131.9
(3) 		107.8
(-3) 		130.2
(2.6) 		111
(-2.2) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 36
(3)
A 		21.6
(-3)
A 		30.1
(0.5)
A 		29.6
(0.3)
P 		14
B 35.4
(1.7)
P 		35.5
(1.8)
A 		27.8
(-3)
A 		37.5
(3)
P 		10
C 55.8
(3)
P 		33.8
(-1.6)
A 		32.5
(-1.9)
A 		27.4
(-3)
P 		28
avr 42.4
(3) 		30.3
(-2.9) 		30.1
(-3) 		31.5
(-2.3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 27.9
(-1.7)
P 		22.8
(-3)
A 		30.4
(-1.1)
P 		32.3
(-0.6)
P 		47
(3)
P 		23.9
(-2.7)
A 		24
B 41
(1.8)
P 		36.8
(0.4)
P 		26.5
(-3)
A 		28
(-2.5)
P 		44.5
(3)
P 		39.5
(1.3)
P 		18
C 44.3
(2.1)
A 		48.7
(3)
P 		37.4
(0.8)
P 		18.2
(-3)
P 		40.5
(1.4)
P 		43.1
(1.9)
M 		31
avr 37.7
(0.9) 		36.1
(0.3) 		31.4
(-1.2) 		26.2
(-3) 		44
(3) 		35.5
(0.1) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183758_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15897
Sequence Type Exemplar sequence
Representative Public ID F47D2.1 NCBI
Target Description F47D2.1 /REP_DB=WormBase Gene ID /WP=CE10686 /TR=Q22988 /GB=AAG24109.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071781(11), NM_071779(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071781 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-19) (srt-19) mRNA, complete cds. 11/11 None
NM_071779 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-20) (srt-20) mRNA, complete cds. 11/11 None
SNAP00000032767 ENSEMBL cdna:SNAP chromosome:CEL140:V:4275848:4276838:-1 11/11 None
SNAP00000032772 ENSEMBL cdna:SNAP chromosome:CEL140:V:4286027:4287017:1 11/11 None
GENEFINDER00000032777 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4284877:4287017:1 11/11 None
GENEFINDER00000032781 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4275861:4278505:-1 11/11 None
F47D2.7 ENSEMBL cdna:known chromosome:CEL140:V:4275848:4278505:-1 gene:F47D2.7 11/11 None
F47D2.1 ENSEMBL cdna:known chromosome:CEL140:V:4284877:4287004:1 gene:F47D2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4284876-4287004(+) 100.0 100.0
chrV:4275860-4278505(-) 99.1 99.1
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
7TM chemoreceptor, srt family
Gene Symbol srt-19
srt-20
Ensembl F47D2.7
F47D2.1
Entrez Gene 185922 Entrez gene
185928 Entrez gene
SwissProt Q22988 EMBL-EBI
Q22986 EMBL-EBI
WormBase CE10686 Wormbase
CE37972 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24109 Serpentine receptor, class t protein 19 [Caenorhabditis elegans] ref|NP_504182.1| Serpentine Receptor, class T family member (srt-19) [Caenorhabditis elegans] 0.0
blast AAG24115 Serpentine receptor, class t protein 20 [Caenorhabditis elegans] ref|NP_504180.2| Serpentine Receptor, class T family member (srt-20) [Caenorhabditis elegans] 0.0
blast AAG24115 Serpentine receptor, class t protein 20 [Caenorhabditis elegans] ref|NP_504180.2| Serpentine Receptor, class T family member (srt-20) [Caenorhabditis elegans] 1.0E-168
blast AAG24109 Serpentine receptor, class t protein 19 [Caenorhabditis elegans] ref|NP_504182.1| Serpentine Receptor, class T family member (srt-19) [Caenorhabditis elegans] 1.0E-168
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.4E-111
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 8.4E-121
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 3.1E-105
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504182.1 6 48-70,83-105,120-142,163-185,211-233,252-274
NP_504180.2 7 48-70,83-105,120-142,163-185,214-236,249-271,281-303
F47D2.7 7 48-70,83-105,120-142,163-185,214-236,249-271,281-303
F47D2.1 6 48-70,83-105,120-142,163-185,211-233,252-274
SNAP00000032767 6 26-48,63-85,105-127,147-169,190-212,222-244
SNAP00000032772 6 26-48,61-83,104-126,152-174,193-215,220-242
GENEFINDER00000032777 7 48-70,83-105,120-142,163-185,227-249,269-291,296-318
GENEFINDER00000032781 6 48-70,83-105,120-142,163-185,228-250,271-293
Sequence
Target Sequence 
>C. ELEGANS:183758_S_AT
gtcgctcttggatcctggatgggatgctgtattgctagtatgacgttggctgtgataaga
atctgcgacttgagcatgcaaatgaatatcaaaaagtgttttgcgggaaacaaaatctac
tttttcctattctcgttttttgtgtacggagttggagccggaattcttacaaagccagtg
atattcacaccaacccacatgtcttggttctttgaccccatggttggaaaaaatccggag
ttttatgtgaacctgccacatacttataacaacattatcatggctatttgtacaattgtc
ttctacggattcttgtcatatctcgctttccgaactgccgacccaaatgctcagagaagc
tcgtcgagaaaaatcctcctccaatccttcttcttctgcattttccacacaatcgcttcc
gtcttatacgcttatatgcaattcattgcagcgccgccatttttgattcttgtcagtcag
attacctggcaaactagcagtggtaagttccgtgtgcattgtgtatctgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGCTCTTGGATCCTGGATGGGAT 54 475 382 Antisense
CAAAATCTACTTTTTCCTATTCTCG 654 189 492 Antisense
CAGTGATATTCACACCAACCCACAT 247 207 557 Antisense
CCCACATGTCTTGGTTCTTTGACCC 599 255 575 Antisense
GAACCTGCCACATACTTATAACAAC 92 347 630 Antisense
GTACAATTGTCTTCTACGGATTCTT 484 461 671 Antisense
ACGGATTCTTGTCATATCTCGCTTT 121 97 686 Antisense
ACTGCCGACCCAAATGCTCAGAGAA 522 97 715 Antisense
TCGCTTCCGTCTTATACGCTTATAT 250 601 794 Antisense
ATTGCAGCGCCGCCATTTTTGATTC 565 5 826 Antisense
GTTCCGTGTGCATTGTGTATCTGAC 564 441 888 Antisense
Sequence Source Affymetrix Proprietary Database