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[183757_at]

Description ZK402.5 /REP_DB=WormBase Gene ID /WP=CE05077 /TR=Q23477 /GB=AAA81756.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 29.5
(1.4)
A 		16.7
(-3)
A 		30.6
(1.7)
A 		34.3
(3)
A 		18
B 31
(-0.1)
A 		47.8
(3)
A 		40.1
(1.6)
A 		14.9
(-3)
A 		33
C 23.1
(-0.8)
A 		36
(1)
A 		6.8
(-3)
A 		50.6
(3)
P 		44
avr 27.9
(-1.4) 		33.5
(3) 		25.8
(-3) 		33.3
(2.8) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 23.5
(1.1)
A 		22.6
(0.8)
A 		12.7
(-2.5)
A 		11.3
(-3)
A 		13
(-2.4)
A 		29.2
(3)
A 		18
B 27.8
(-0.3)
A 		27.5
(-0.3)
A 		15.8
(-2)
A 		51.7
(3)
A 		22.1
(-1.1)
A 		8.3
(-3)
A 		43
C 13.7
(-0.7)
A 		23.7
(1.9)
A 		20.2
(1)
A 		4.7
(-3)
A 		27
(2.7)
A 		28.2
(3)
A 		24
avr 21.7
(0.9) 		24.6
(3) 		16.2
(-3) 		22.6
(1.6) 		20.7
(0.2) 		21.9
(1.1) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 10.7
(3)
A 		3.6
(-3)
A 		8
(0.7)
A 		5
(-1.8)
A 		7
B 9.9
(1.7)
A 		11.8
(3)
A 		9.3
(1.3)
A 		3.2
(-3)
A 		9
C 7.6
(0.9)
A 		10.3
(3)
A 		2.4
(-3)
A 		8.5
(1.6)
P 		8
avr 9.4
(3) 		8.6
(1.7) 		6.6
(-1.4) 		5.6
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4.3
(-1.3)
A 		8
(3)
A 		2.8
(-3)
A 		2.9
(-2.9)
A 		3.9
(-1.7)
A 		7.1
(2)
A 		5
B 9.7
(0.7)
A 		9.2
(0.5)
A 		3.8
(-2.6)
A 		13.7
(3)
A 		9
(0.3)
A 		3.1
(-3)
A 		11
C 5.1
(-0.1)
A 		7.2
(1.4)
A 		5.1
(-0.1)
A 		0.9
(-3)
A 		8.7
(2.4)
A 		9.5
(3)
A 		9
avr 6.4
(0.6) 		8.1
(3) 		3.9
(-3) 		5.8
(-0.3) 		7.2
(1.7) 		6.6
(0.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183757_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18586
Sequence Type Exemplar sequence
Representative Public ID ZK402.5 NCBI
Target Description ZK402.5 /REP_DB=WormBase Gene ID /WP=CE05077 /TR=Q23477 /GB=AAA81756.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075860(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075860 NCBI Caenorhabditis elegans ZK402.5 (ZK402.5) mRNA, complete cds. 11/11 A 
ZK402.5 ENSEMBL cdna:known chromosome:CEL140:X:1398819:1400746:-1 gene:ZK402.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013812 7/11 Cross Hyb Matching Probes None
GENEFINDER00000013818 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5602074-5603564(-) 80.66 80.85
chrX:1398818-1400746(-) 94.65 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK402.5
Entrez Gene 191315 Entrez gene
SwissProt Q23477 EMBL-EBI
WormBase CE05077 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81756 Hypothetical protein ZK402.5 [Caenorhabditis elegans] ref|NP_508261.1| ZK402.5 [Caenorhabditis elegans] 0.0
blast NP_504478 CD4.8 [Caenorhabditis elegans] gb|AAB88346.1| Hypothetical protein CD4.8 [Caenorhabditis elegans] 0.0
blast CAB07289 Hypothetical protein T28A8.6 [Caenorhabditis elegans] ref|NP_499792.1| T28A8.6 [Caenorhabditis elegans] 5.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 3.0E-11
Pfam IPR006570 EMBL-EBI SPK 1.2E-63
Sequence
Target Sequence 
>C. ELEGANS:183757_AT
ctatttatgtgaaatctcttcaattggacagtgacgacgatgaggtgcaatacatcggag
cgatgaagggacagccgaagcctgaaccaatcttcgaaggatttgcaccacataattcga
atagcgatcatgtgcaagaagaacaaaaaactggtgttccacgcttcgatcgtcaacaaa
tcagtctttccgcgaatactggagccacttcagatgaacccattaatatgtctgaattcc
tgaaacaactgacccagttcatttgctttctcaaaagtagggaactcgaggagctcaagc
aacaaatcaaaaagtcaattggaactaatgttgataagaaaatcctatttgccgagcttc
gtggagttttcgaggcattcctcatcacgatcaatcgaaaaatcaaagcaaccgcttgtc
cctgctatgtaggtcaaggatttccttctcaagttcaatggacctttttttccttttttt
tttgggatgaaaaaattcgcaaaaaaatttcccgtggtggagggttgaactcatcccctc
cc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATTTATGTGAAATCTCTTCAATT 426 223 935 Antisense
AGCCACTTCAGATGAACCCATTAAT 133 83 1137 Antisense
CAGATGAACCCATTAATATGTCTGA 618 205 1145 Antisense
GTTCATTTGCTTTCTCAAAAGTAGG 69 445 1191 Antisense
AAAAGTAGGGAACTCGAGGAGCTCA 604 119 1207 Antisense
GAAAATCCTATTTGCCGAGCTTCGT 359 353 1272 Antisense
AAATCAAAGCAACCGCTTGTCCCTG 369 115 1334 Antisense
CGCTTGTCCCTGCTATGTAGGTCAA 631 253 1347 Antisense
TGTCCCTGCTATGTAGGTCAAGGAT 709 551 1351 Antisense
GTGGTGGAGGGTTGAACTCATCCCC 8 489 1448 Antisense
TGGAGGGTTGAACTCATCCCCTCCC 92 549 1452 Antisense
Sequence Source Affymetrix Proprietary Database