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[183756_at]

Description C16C4.9 /REP_DB=WormBase Gene ID /WP=CE08205 /TR=O16557 /GB=AAB93662.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 01      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 7.5
(-1.7)
A 		0.8
(-3)
A 		3.2
(-2.5)
A 		31.8
(3)
A 		31
B 2.8
(-2.7)
A 		3.2
(-2.6)
A 		1.1
(-3)
A 		31.1
(3)
A 		30
C 3.7
(-3)
A 		3.6
(-3)
A 		16.8
(-1.1)
A 		45.5
(3)
A 		42
avr 4.7
(-2.6) 		2.5
(-3) 		7
(-2.2) 		36.1
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 39.3
(3)
A 		2.8
(-2.7)
A 		10.7
(-1.5)
A 		2.7
(-2.7)
A 		1.1
(-3)
A 		3.9
(-2.6)
A 		38
B 12.5
(3)
A 		7.2
(0.3)
A 		1
(-2.8)
A 		0.6
(-3)
A 		3.4
(-1.6)
A 		6.8
(0.1)
A 		12
C 11.4
(-0.8)
A 		21.4
(3)
A 		11.2
(-0.9)
A 		20.5
(2.7)
A 		5.7
(-3)
A 		7
(-2.5)
A 		16
avr 21.1
(3) 		10.5
(-0.6) 		7.6
(-1.6) 		7.9
(-1.5) 		3.4
(-3) 		5.9
(-2.2) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.7
(0.3)
A 		0.2
(-3)
A 		0.8
(-2.2)
A 		4.7
(3)
A 		5
B 0.9
(-2.3)
A 		0.8
(-2.4)
A 		0.2
(-3)
A 		6.6
(3)
A 		6
C 1.2
(-2.8)
A 		1
(-3)
A 		5.8
(1.3)
A 		7.7
(3)
A 		7
avr 1.6
(-2) 		0.7
(-3) 		2.3
(-1.3) 		6.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 7.2
(3)
A 		1
(-2.4)
A 		2.3
(-1.3)
A 		0.7
(-2.7)
A 		0.3
(-3)
A 		0.9
(-2.5)
A 		7
B 4.4
(3)
A 		2.4
(0.2)
A 		0.2
(-2.9)
A 		0.1
(-3)
A 		1.4
(-1.2)
A 		2.5
(0.3)
A 		4
C 4.2
(0.1)
A 		6.5
(3)
A 		2.8
(-1.7)
A 		4.1
(-0.1)
A 		1.8
(-3)
A 		2.3
(-2.4)
A 		5
avr 5.3
(3) 		3.3
(0.1) 		1.8
(-2.1) 		1.6
(-2.4) 		1.2
(-3) 		1.9
(-2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183756_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5974
Sequence Type Exemplar sequence
Representative Public ID C16C4.9 NCBI
Target Description C16C4.9 /REP_DB=WormBase Gene ID /WP=CE08205 /TR=O16557 /GB=AAB93662.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061706(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061706 NCBI Caenorhabditis elegans C16C4.9 (C16C4.9) mRNA, complete cds. 11/11 None
C16C4.9 ENSEMBL cdna:known chromosome:CEL140:II:1879701:1880710:-1 gene:C16C4.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026903 8/11 Cross Hyb Matching Probes None
GENEFINDER00000026923 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1879699-1880709(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C4.9
Entrez Gene 182663 Entrez gene
SwissProt O16557 EMBL-EBI
WormBase CE08205 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93662 Hypothetical protein C16C4.9 [Caenorhabditis elegans] ref|NP_494107.1| C16C4.9 [Caenorhabditis elegans] 1.0E-124
blast AAB93655 Hypothetical protein C16C4.10 [Caenorhabditis elegans] ref|NP_494108.1| C16C4.10 [Caenorhabditis elegans] 2.0E-68
blast AAB93656 Hypothetical protein C16C4.11 [Caenorhabditis elegans] ref|NP_494109.1| C16C4.11 [Caenorhabditis elegans] 2.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 1.1E-7
Pfam IPR002083 EMBL-EBI MATH 3.8E-7
Pfam IPR002083 EMBL-EBI MATH 3.3E-55
Sequence
Target Sequence 
>C. ELEGANS:183756_AT
gttcacaatcagcgaggctattaaaaacatttcacgatttgtgaatgaagaggactattt
cactgacatagaagaacgattcaatattccatggttggatttggaaagtgattatgtggt
tgatgatagtgttgtaattgaagctcatgtcaaaataattaaaatgatctactctccgtg
catagaaaacaaaaatcagaaaatatttctactgcatcacacggttgaaaatgtttcgag
tattgaagaaggaggtcactattatacaaaaacagagaaacgattcaatattccatggag
gctactgattcaaagatgtgatggatttttcggattatatttatgctgtcaaaaagaaca
atgcaatagaaggaactggactattgaagtagattacacgctgaaactagtttccgtaaa
tggccagagcttatcttccaaagtaaaatacactttcaacgagcctaatgcttacggcat
tggcaagtttattcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCACAATCAGCGAGGCTATTAAA 142 445 75 Antisense
GAAGAGGACTATTTCACTGACATAG 680 337 121 Antisense
AATGATCTACTCTCCGTGCATAGAA 340 165 237 Antisense
ATATTTCTACTGCATCACACGGTTG 476 19 277 Antisense
GAAGAAGGAGGTCACTATTATACAA 89 333 319 Antisense
GGAGGCTACTGATTCAAAGATGTGA 617 515 371 Antisense
GATTTTTCGGATTATATTTATGCTG 450 429 398 Antisense
GATTACACGCTGAAACTAGTTTCCG 213 423 466 Antisense
AATACACTTTCAACGAGCCTAATGC 614 171 521 Antisense
GAGCCTAATGCTTACGGCATTGGCA 485 385 535 Antisense
TACGGCATTGGCAAGTTTATTCGAT 632 643 547 Antisense
Sequence Source Affymetrix Proprietary Database