[Home] | [Total List]

[183755_s_at]

Description F46C8.8 /REP_DB=WormBase Gene ID /WP=CE28336 /TR=Q9GYP1 /GB=AAF99946.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 80      4grp_high_8_8 > 54      6grp_highest_nonorm > 53      6grp_total > 82      4grp_total > 57      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2145
1 2 3 4 range
A 150
(-3)
P 		1904.4
(2)
P 		2248
(3)
P 		176.9
(-2.9)
P 		2098
B 171.6
(-2.8)
P 		1877.3
(2)
P 		2211.5
(3)
P 		103.4
(-3)
A 		2108
C 170.2
(-3)
P 		1808.1
(2.8)
P 		1866.9
(3)
P 		175.4
(-3)
P 		1697
avr 163.9
(-3) 		1863.3
(2.2) 		2108.8
(3) 		151.9
(-3) 		1957

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1191
1 2 3 4 5 6 range
A 272.7
(-3)
P 		1011.8
(2.5)
P 		524.3
(-1.1)
P 		951
(2.1)
P 		1077.1
(3)
P 		485.3
(-1.4)
P 		804
B 238.5
(-3)
P 		992.8
(1.9)
P 		1017.9
(2)
P 		1165.9
(3)
P 		994.8
(1.9)
P 		531.9
(-1.1)
P 		927
C 201.3
(-3)
P 		1092.9
(1.5)
P 		887.4
(0.5)
P 		959
(0.8)
P 		1392.4
(3)
P 		477.4
(-1.6)
P 		1191
avr 237.5
(-3) 		1032.5
(2.2) 		809.9
(0.7) 		1025.3
(2.2) 		1154.8
(3) 		498.2
(-1.3) 		917
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 629
1 2 3 4 range
A 54.6
(-2.7)
P 		413.4
(1.1)
P 		587.7
(3)
P 		25.9
(-3)
P 		562
B 54.7
(-2.6)
P 		463.7
(2.4)
P 		512.5
(3)
P 		22
(-3)
A 		491
C 56.3
(-2.7)
P 		519.8
(1.7)
P 		650.7
(3)
P 		29.6
(-3)
P 		621
avr 55.2
(-2.7) 		465.6
(1.7) 		583.6
(3) 		25.8
(-3) 		558

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 400
1 2 3 4 5 6 range
A 50.3
(-3)
P 		359.8
(3)
P 		114.2
(-1.8)
P 		241.2
(0.7)
P 		325
(2.3)
P 		118.2
(-1.7)
P 		310
B 83
(-3)
P 		330.4
(1.6)
P 		247.2
(0.1)
P 		308.8
(1.2)
P 		404.2
(3)
P 		198.4
(-0.8)
P 		321
C 74.6
(-3)
P 		333.5
(1.1)
P 		225.9
(-0.6)
P 		192.9
(-1.1)
P 		450.6
(3)
P 		159.8
(-1.6)
P 		376
avr 69.3
(-3) 		341.2
(2) 		195.8
(-0.7) 		247.6
(0.3) 		393.3
(3) 		158.8
(-1.3) 		324
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183755_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16151
Sequence Type Exemplar sequence
Representative Public ID F46C8.8 NCBI
Target Description F46C8.8 /REP_DB=WormBase Gene ID /WP=CE28336 /TR=Q9GYP1 /GB=AAF99946.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076877(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076877 NCBI Caenorhabditis elegans F46C8.8 (F46C8.8) mRNA, complete cds. 9/11 None
GENEFINDER00000044536 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7551316:7554370:-1 11/11 None
F46C8.8 ENSEMBL cdna:known chromosome:CEL140:X:7551208:7554370:-1 gene:F46C8.8 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044531 8/11 Cross Hyb Matching Probes None
SNAP00000044532 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7551314-7553574(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46C8.8
Entrez Gene 181015 Entrez gene
SwissProt Q9GYP1 EMBL-EBI
WormBase CE35539 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99946 Hypothetical protein F46C8.8 [Caenorhabditis elegans] ref|NP_509278.2| F46C8.8 [Caenorhabditis elegans] 1.0E-122
blast T34271 hypothetical protein F46C8.8 - Caenorhabditis elegans 1.0E-76
blast AAF99946 Hypothetical protein F46C8.8 [Caenorhabditis elegans] ref|NP_509278.2| F46C8.8 [Caenorhabditis elegans] 3.0E-64
blast T34271 hypothetical protein F46C8.8 - Caenorhabditis elegans 1.0E-50
blast CAE70237 Hypothetical protein CBG16726 [Caenorhabditis briggsae] 8.0E-39
blast CAE70237 Hypothetical protein CBG16726 [Caenorhabditis briggsae] 1.0E-38
Sequence
Target Sequence 
>C. ELEGANS:183755_S_AT
tcacagcaatcatcctcacagtctgctgccggcggaaaccttttgagtctttttgtagtt
ttgcagcagcttgttatatctaacagtaaaattgataacgaagttttgtattctaaaacc
aactgcctggaaaatctccctcacaaaagttttgttctgatatttcatcgtcgaactcga
aattttatgggcagaacctcaatgttcctcaaaaactggaatatcaaaaacaatgctttt
caaagcattaaacgttcgattttaggattgatgccaactccagccccaacaacgaccaca
accactgaagcaagccctgttcaaaaaattatgaatatgttcgttcctcaagaacgccca
cagcctgaacaatcgtccagccgtgggaagttgaactttatggaaatgtttggattggtg
aagccaaccactaccaccacttcagctccacctctccgagcactctttgctccagataaa
ccgtacaagggaactgctgaggactttgatggaatcatgaatgctctgcttcgtacaaac
gctaaaccagctcgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACAGCAATCATCCTCACAGTCTG 702 627 325 Antisense
CTGCTGCCGGCGGAAACCTTTTGAG 401 235 347 Antisense
ATGGGCAGAACCTCAATGTTCCTCA 115 49 511 Antisense
TTAGGATTGATGCCAACTCCAGCCC 616 681 586 Antisense
AACCACTGAAGCAAGCCCTGTTCAA 403 147 624 Antisense
TGTTCGTTCCTCAAGAACGCCCACA 331 561 662 Antisense
GAACAATCGTCCAGCCGTGGGAAGT 375 353 691 Antisense
GGATTGGTGAAGCCAACCACTACCA 426 507 736 Antisense
AGCACTCTTTGCTCCAGATAAACCG 260 77 783 Antisense
GAATCATGAATGCTCTGCTTCGTAC 21 329 836 Antisense
GTACAAACGCTAAACCAGCTCGCCA 35 457 857 Antisense
Sequence Source Affymetrix Proprietary Database