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[183754_at]

Description Y43F4B.8 /REP_DB=WormBase Gene ID /WP=CE16633 /TR=O45937 /GB=CAA16337.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 57      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 138.1
(2.5)
A 		30.8
(-3)
A 		148.5
(3)
A 		103.5
(0.7)
P 		118
B 64.9
(-2.8)
A 		139.7
(3)
A 		115.2
(1.1)
A 		62.4
(-3)
A 		77
C 69.1
(-3)
A 		151.2
(3)
A 		82.8
(-2)
A 		79.9
(-2.2)
A 		82
avr 90.7
(-1.4) 		107.2
(1.5) 		115.5
(3) 		81.9
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 157.2
(3)
A 		76.1
(-0.4)
A 		56.7
(-1.2)
A 		74.5
(-0.4)
A 		79.5
(-0.2)
A 		12.7
(-3)
A 		145
B 14.4
(-3)
A 		81.9
(0.8)
A 		89.1
(1.3)
A 		119.8
(3)
A 		93.1
(1.5)
A 		71.1
(0.2)
A 		105
C 19.7
(-3)
A 		56.9
(0.3)
A 		78.5
(2.3)
A 		79.1
(2.3)
A 		86.9
(3)
A 		43.3
(-0.9)
A 		67
avr 63.8
(-0.4) 		71.6
(0.6) 		74.8
(1) 		91.1
(3) 		86.5
(2.4) 		42.4
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 50.3
(3)
A 		6.7
(-3)
A 		38.8
(1.4)
A 		15.1
(-1.8)
P 		44
B 20.7
(-0.9)
A 		34.5
(3)
A 		26.7
(0.8)
A 		13.3
(-3)
A 		21
C 22.9
(-1.1)
A 		43.5
(3)
A 		28.9
(0.1)
A 		13.5
(-3)
A 		30
avr 31.3
(2.9) 		28.2
(1.9) 		31.5
(3) 		14
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 29
(3)
A 		27.1
(2.6)
A 		12.4
(-0.8)
A 		18.9
(0.7)
A 		24
(1.8)
A 		3.1
(-3)
A 		26
B 5
(-3)
A 		27.3
(1.1)
A 		21.6
(0)
A 		31.7
(1.9)
A 		37.8
(3)
A 		26.5
(0.9)
A 		33
C 7.3
(-3)
A 		17.4
(-0.1)
A 		20
(0.7)
A 		15.9
(-0.5)
A 		28.1
(3)
A 		14.5
(-0.9)
A 		21
avr 13.8
(-3) 		23.9
(0.7) 		18
(-1.4) 		22.2
(0.1) 		30
(3) 		14.7
(-2.7) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183754_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6689
Sequence Type Exemplar sequence
Representative Public ID Y43F4B.8 NCBI
Target Description Y43F4B.8 /REP_DB=WormBase Gene ID /WP=CE16633 /TR=O45937 /GB=CAA16337.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067344(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067344 NCBI Caenorhabditis elegans Y43F4B.8 (Y43F4B.8) mRNA, complete cds. 11/11 None
GENEFINDER00000007807 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13315219:13316480:-1 9/11 None
Y43F4B.8 ENSEMBL cdna:known chromosome:CEL140:III:13315863:13316480:-1 gene:Y43F4B.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Y43F4B.9.1 11/11 Negative Strand Matching Probes None
Y43F4B.9.2 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13315858-13316476(-) 96.28 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F4B.8
Entrez Gene 189864 Entrez gene
SwissProt O45937 EMBL-EBI
WormBase CE16633 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16337 Hypothetical protein Y43F4B.8 [Caenorhabditis elegans] ref|NP_499745.1| Y43F4B.8 [Caenorhabditis elegans] 1.0E-110
blast CAA16337 Hypothetical protein Y43F4B.8 [Caenorhabditis elegans] ref|NP_499745.1| Y43F4B.8 [Caenorhabditis elegans] 5.0E-81
blast CAB60526 Hypothetical protein Y56A3A.9 [Caenorhabditis elegans] ref|NP_499541.1| Y56A3A.9 [Caenorhabditis elegans] 5.0E-43
blast T27754 hypothetical protein ZK1320.8 - Caenorhabditis elegans 4.0E-37
blast CAB60526 Hypothetical protein Y56A3A.9 [Caenorhabditis elegans] ref|NP_499541.1| Y56A3A.9 [Caenorhabditis elegans] 1.0E-30
blast CAB54468 Hypothetical protein Y64G10A.3 [Caenorhabditis elegans] ref|NP_502734.1| Y64G10A.3 [Caenorhabditis elegans] 1.0E-27
Sequence
Target Sequence 
>C. ELEGANS:183754_AT
cagcgtggcaccacttggcttgataataacgcctacagagcagttctgagaacttgctgc
ggcctcacaagtgacaccccagcacaccatatctacgaggaagcgaccagattgcccctg
agagaagaaattgagcttagaagacaacaattccagatttcgtcaataaatacgccagga
catccatccaaagacttaaagctcagaaggccgacggaaagagcgtcaaataggccaagg
gagcctccgttagattaccctagcaacaccacgagcaactggcaaattcctcaaatgacc
accaaggccatccagaaagcaaaccataggaaattcgtgcaggaatttctgaacaagaaa
ccggtgaacaacgtgctgggcacccctgccccagcggtggccgaggaagagaaatcacta
ccaagggtgaagcagagtggagctagcaaggctgagatgtggacattccacgatggtacc
cggctacttcgcgataccgacctgtgggaaatgtggcgatcaaagaggaaatgtggcaca
cttgttgggatgctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCGTGGCACCACTTGGCTTGATA 77 201 19 Antisense
CAGTTCTGAGAACTTGCTGCGGCCT 377 207 59 Antisense
CCCCAGCACACCATATCTACGAGGA 100 263 95 Antisense
ACGAGGAAGCGACCAGATTGCCCCT 4 95 113 Antisense
TACGCCAGGACATCCATCCAAAGAC 649 647 189 Antisense
ATAGGCCAAGGGAGCCTCCGTTAGA 335 1 248 Antisense
TTAGATTACCCTAGCAACACCACGA 612 677 268 Antisense
ATTCCTCAAATGACCACCAAGGCCA 576 3 304 Antisense
GAAACCGGTGAACAACGTGCTGGGC 153 351 375 Antisense
TCGCGATACCGACCTGTGGGAAATG 206 599 507 Antisense
GTGGCACACTTGTTGGGATGCTCAA 361 491 551 Antisense
Sequence Source Affymetrix Proprietary Database