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[183753_at]

Description T26A8.2 /REP_DB=WormBase Gene ID /WP=CE07548 /TR=Q22804 /GB=AAA85755.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 02      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 90      6grp_total > 07      4grp_total > 30      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 174.5
(3)
P 		64.6
(-3)
P 		77.5
(-2.3)
P 		133
(0.7)
P 		110
B 163.3
(3)
P 		84
(-2.8)
P 		81.8
(-3)
P 		101.9
(-1.5)
P 		82
C 181.7
(3)
P 		148.4
(1.2)
P 		68.2
(-3)
P 		167.2
(2.2)
P 		114
avr 173.2
(3) 		99
(-1.6) 		75.8
(-3) 		134
(0.6) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 119.3
(0.6)
P 		152.9
(3)
P 		119.2
(0.6)
P 		111.8
(0.1)
P 		77.2
(-2.4)
P 		68.5
(-3)
P 		84
B 183.5
(3)
P 		98.2
(-0.9)
P 		138.9
(1)
P 		87
(-1.4)
P 		52.4
(-3)
P 		100.7
(-0.8)
P 		131
C 173.6
(3)
P 		100.3
(-1.4)
P 		99.9
(-1.5)
P 		120.4
(-0.2)
P 		74.3
(-3)
P 		116.9
(-0.4)
P 		99
avr 158.8
(3) 		117.1
(0.2) 		119.3
(0.4) 		106.4
(-0.5) 		68
(-3) 		95.4
(-1.2) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 63.5
(3)
P 		14
(-3)
P 		20.3
(-2.2)
P 		19.5
(-2.3)
P 		50
B 52.1
(3)
P 		20.8
(-2.7)
P 		18.9
(-3)
P 		21.7
(-2.5)
P 		33
C 60.1
(3)
P 		42.7
(0.1)
P 		23.8
(-3)
P 		28.2
(-2.3)
P 		36
avr 58.6
(3) 		25.8
(-2.2) 		21
(-3) 		23.1
(-2.7) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 22
(-2.2)
P 		54.4
(3)
P 		26
(-1.5)
P 		28.4
(-1.1)
P 		23.3
(-1.9)
P 		16.7
(-3)
P 		38
B 63.8
(3)
P 		32.7
(-1.4)
P 		33.7
(-1.2)
P 		23.1
(-2.7)
P 		21.3
(-3)
P 		37.5
(-0.7)
P 		43
C 64.4
(3)
P 		30.6
(-2)
P 		25.4
(-2.8)
P 		24.2
(-3)
P 		24.1
(-3)
P 		39.1
(-0.8)
P 		40
avr 50.1
(3) 		39.2
(0.6) 		28.4
(-1.8) 		25.2
(-2.5) 		22.9
(-3) 		31.1
(-1.2) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183753_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9556
Sequence Type Exemplar sequence
Representative Public ID T26A8.2 NCBI
Target Description T26A8.2 /REP_DB=WormBase Gene ID /WP=CE07548 /TR=Q22804 /GB=AAA85755.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069033(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069033 NCBI Caenorhabditis elegans T26A8.2 (T26A8.2) mRNA, complete cds. 11/11 None
SNAP00000003321 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8427517:8428812:1 9/11 None
T26A8.2 ENSEMBL cdna:known chromosome:CEL140:IV:8427301:8428494:1 gene:T26A8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000003328 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8427306-8428500(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26A8.2
Entrez Gene 188913 Entrez gene
SwissProt Q22804 EMBL-EBI
WormBase CE07548 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501434 T26A8.2 [Caenorhabditis elegans] gb|AAA85755.1| Hypothetical protein T26A8.2 [Caenorhabditis elegans] 1.0E-149
blast CAE71532 Hypothetical protein CBG18470 [Caenorhabditis briggsae] 1.0E-108
blast NP_501434 T26A8.2 [Caenorhabditis elegans] gb|AAA85755.1| Hypothetical protein T26A8.2 [Caenorhabditis elegans] 7.0E-89
blast CAE71532 Hypothetical protein CBG18470 [Caenorhabditis briggsae] 6.0E-61
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501434.1 2 20-42,265-287
T26A8.2 2 20-42,265-287
Sequence
Target Sequence 
>C. ELEGANS:183753_AT
aaccagaattcattgcaaaccctcaatattgaatttcaaatgagcactcaaaatctctct
ataaatactttaatctatgcattttctctacgaatgcgtctggattatcattcaattgtt
gatactgaattattcttgactgacacgattcaactaacatctccaattgcacaaattcaa
actattgctcgtctttcaatggatcaatcaaacccattctttaccaaagaacatataaga
ataattgacagaagacgtcaggatgtagaacactatcagattcattcagtgttaaaaaga
attactggagcacctattgctttgaagatggagagaaagtctactcttctattatctgca
ccaagttcccctcaatccttgtccatctcactgtcgctagcagttccagaaatggaattc
atctacaaaacagggttttgggagttactcaaatggttttggatacaatatctggcatca
tttacaattgttgattacgtttttacctcatgtacttcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCAGAATTCATTGCAAACCCTCA 313 147 352 Antisense
TAATCTATGCATTTTCTCTACGAAT 701 635 422 Antisense
GACACGATTCAACTAACATCTCCAA 653 367 493 Antisense
AATTCAAACTATTGCTCGTCTTTCA 610 175 525 Antisense
TGCTCGTCTTTCAATGGATCAATCA 209 581 537 Antisense
GGATCAATCAAACCCATTCTTTACC 423 511 552 Antisense
ATTACTGGAGCACCTATTGCTTTGA 41 13 652 Antisense
CTACTCTTCTATTATCTGCACCAAG 214 227 692 Antisense
TCTCACTGTCGCTAGCAGTTCCAGA 270 613 737 Antisense
GGATACAATATCTGGCATCATTTAC 460 511 812 Antisense
TACGTTTTTACCTCATGTACTTCGT 699 647 847 Antisense
Sequence Source Affymetrix Proprietary Database