[Home] | [Total List]

[183752_at]

Description T12A2.1 /REP_DB=WormBase Gene ID /WP=CE07478 /TR=Q22419 /GB=AAC24449.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 61      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 257
1 2 3 4 range
A 310.3
(3)
A 		280.1
(2.2)
A 		233.5
(1)
M 		76.5
(-3)
A 		234
B 333.8
(3)
A 		190.5
(-1.1)
A 		304.6
(2.2)
P 		121.6
(-3)
A 		212
C 326.9
(3)
A 		241.8
(0)
A 		296
(1.9)
P 		154.9
(-3)
A 		172
avr 323.7
(3) 		237.5
(0.5) 		278
(1.7) 		117.7
(-3) 		206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1169
1 2 3 4 5 6 range
A 446.4
(-2.2)
M 		540.1
(-1.7)
P 		1416.8
(3)
P 		1046
(1)
P 		724.9
(-0.7)
P 		289.7
(-3)
P 		1127
B 248.4
(-3)
A 		367.6
(-2.3)
P 		1078.5
(1.9)
P 		1256.9
(3)
P 		658.4
(-0.6)
P 		282.7
(-2.8)
P 		1009
C 311.4
(-2.6)
M 		404
(-2.1)
P 		1212.5
(2.9)
P 		1236.1
(3)
P 		594.9
(-0.9)
P 		248
(-3)
P 		988
avr 335.4
(-2.6) 		437.2
(-2) 		1235.9
(3) 		1179.7
(2.6) 		659.4
(-0.6) 		273.5
(-3) 		962
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 113
(3)
A 		60.8
(-0.1)
A 		61.1
(-0.1)
M 		11.2
(-3)
A 		102
B 106.4
(3)
A 		47.1
(-1.4)
A 		70.6
(0.3)
P 		25.9
(-3)
A 		81
C 108.2
(3)
A 		69.5
(0.2)
A 		103.2
(2.6)
P 		26.1
(-3)
A 		82
avr 109.2
(3) 		59.1
(-0.4) 		78.3
(0.9) 		21.1
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 82.3
(-2.7)
M 		192.1
(0.1)
P 		308.5
(3)
P 		265.3
(1.9)
P 		218.7
(0.7)
P 		70.5
(-3)
P 		238
B 86.4
(-3)
A 		122.3
(-2.1)
P 		261.9
(1.3)
P 		332.9
(3)
P 		267.5
(1.4)
P 		105.4
(-2.5)
P 		247
C 115.4
(-2.1)
M 		123.3
(-1.9)
P 		308.6
(3)
P 		248.6
(1.4)
P 		192.5
(-0.1)
P 		83
(-3)
P 		226
avr 94.7
(-2.8) 		145.9
(-1.3) 		293
(3) 		282.3
(2.7) 		226.2
(1.1) 		86.3
(-3) 		207
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183752_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6205
Sequence Type Exemplar sequence
Representative Public ID T12A2.1 NCBI
Target Description T12A2.1 /REP_DB=WormBase Gene ID /WP=CE07478 /TR=Q22419 /GB=AAC24449.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065962(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065962 NCBI Caenorhabditis elegans T12A2.1 (T12A2.1) mRNA, complete cds. 11/11 None
SNAP00000044236 ENSEMBL cdna:SNAP chromosome:CEL140:III:6270609:6271153:1 10/11 None
GENEFINDER00000044245 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6270609:6271153:1 10/11 None
T12A2.1 ENSEMBL cdna:known chromosome:CEL140:III:6251751:6271156:1 gene:T12A2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6251749-6271152(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T12A2.1
Entrez Gene 175887 Entrez gene
SwissProt Q22419 EMBL-EBI
WormBase CE07478 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1589543_S_AT similar to T12A2.1 cfa
CANINE_2:CFA.11335.1.A1_AT similar to T12A2.1 cfa
CANINE_2:CFA.14925.1.A1_S_AT similar to T12A2.1 cfa
CANINE_2:CFAAFFX.10568.1.S1_AT similar to T12A2.1 cfa
CANINE_2:CFAAFFX.10568.1.S1_S_AT similar to T12A2.1 cfa
CHICKEN:GGAAFFX.7250.1.S1_AT similar to hypothetical protein MGC35366 gga
HU35KSUBB:RC_R06746_AT hypothetical protein MGC35366 hs
U133_X3P:HS.84507.0.A1_3P_X_AT hypothetical protein MGC35366 hs
U133_X3P:HS.84507.0.A1_3P_AT hypothetical protein MGC35366 hs
HG-U133_PLUS_2:229596_AT hypothetical protein MGC35366 hs
HG-U133B:229596_AT hypothetical protein MGC35366 hs
HG-U95B:52314_AT hypothetical protein MGC35366 hs
HG-U95B:52746_AT hypothetical protein MGC35366 hs
HU35KSUBC:RC_C20952_AT Hypothetical protein MGC35366 hs
MOUSE430A_2:1427370_AT RIKEN cDNA 1300019J08 gene mm
MOE430A:1427370_AT RIKEN cDNA 1300019J08 gene mm
MOUSE430_2:1427370_AT RIKEN cDNA 1300019J08 gene mm
MOUSE430_2:1447380_AT RIKEN cDNA 1300019J08 gene mm
MOE430B:1447380_AT RIKEN cDNA 1300019J08 gene mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
19556 histidine catabolism to glutamate and formamide inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
16812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24449 Hypothetical protein T12A2.1 [Caenorhabditis elegans] ref|NP_498363.1| T12A2.1 [Caenorhabditis elegans] 0.0
blast CAE70728 Hypothetical protein CBG17472 [Caenorhabditis briggsae] 0.0
blast BAB23790.1 unnamed protein product [Mus musculus] ref|XP_125854.1| PREDICTED: hypothetical protein LOC71761 [Mus musculus] 1.0E-116
blast AAC24449 Hypothetical protein T12A2.1 [Caenorhabditis elegans] ref|NP_498363.1| T12A2.1 [Caenorhabditis elegans] 8.0E-78
blast CAE70728 Hypothetical protein CBG17472 [Caenorhabditis briggsae] 4.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR006680 EMBL-EBI Amidohydrolase 1.9E-4
Pfam IPR006680 EMBL-EBI Amidohydrolase 1.3E-6
Pfam IPR006680 EMBL-EBI Amidohydrolase 1.3E-6
Sequence
Target Sequence 
>C. ELEGANS:183752_AT
gatgggagccaagattggggcccgcgcaatgtcgcatctcgaagaaatttccgacaaagg
aatccgcgggatggctcaagcaggatcggttgctgttcttctaccatcaacagcctttat
tctccgtttgacacctccaccagcacgaaagttaatcgaaaataatgtgattgtagcgtt
gggatctgatttcaatccgaatgcatattgtctcgctatgcccatgattatgcactttgc
atgtgtaactatgaagctgtctatgccagaagcactgactgccgctactctcaactcggc
acattcaattggaagaggaaagtctcacggagcaattgccaaaggaagaaacgccgattt
cgtgattctttccgccaactcctgggagcacatcatctaccgtattgctgctcatcatga
cgtcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGGAGCCAAGATTGGGGCCCGC 241 405 885 Antisense
AATCCGCGGGATGGCTCAAGCAGGA 206 167 945 Antisense
AGCAGGATCGGTTGCTGTTCTTCTA 27 79 963 Antisense
TACCATCAACAGCCTTTATTCTCCG 66 651 986 Antisense
CACCTCCACCAGCACGAAAGTTAAT 372 201 1016 Antisense
ATGCATATTGTCTCGCTATGCCCAT 583 43 1085 Antisense
TATGCCAGAAGCACTGACTGCCGCT 525 657 1146 Antisense
ACTCTCAACTCGGCACATTCAATTG 95 101 1171 Antisense
AACGCCGATTTCGTGATTCTTTCCG 374 145 1234 Antisense
GCACATCATCTACCGTATTGCTGCT 470 315 1272 Antisense
GTATTGCTGCTCATCATGACGTCAT 65 453 1286 Antisense
Sequence Source Affymetrix Proprietary Database