[Home] | [Total List]

[183751_at]

Description F32A6.2 /REP_DB=WormBase Gene ID /WP=CE04470 /TR=Q19956 /GB=AAA81386.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 23      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 44
(3)
M 		1.8
(-3)
A 		2.4
(-2.9)
A 		38.1
(2.2)
A 		42
B 84.2
(3)
A 		14.6
(-2.1)
A 		2.9
(-3)
A 		39
(-0.3)
A 		81
C 43
(1.3)
P 		10.6
(-2.2)
A 		3.1
(-3)
A 		58.4
(3)
A 		55
avr 57.1
(3) 		9
(-2.3) 		2.8
(-3) 		45.2
(1.7) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 46.5
(3)
A 		1.4
(-3)
A 		20.8
(-0.4)
A 		34.8
(1.4)
M 		9.2
(-2)
A 		38
(1.9)
A 		45
B 42.6
(3)
A 		18
(-0.7)
A 		23
(0.1)
A 		2.3
(-3)
A 		21.4
(-0.2)
A 		20.3
(-0.3)
A 		40
C 19.4
(-0.3)
A 		5.6
(-3)
A 		11.9
(-1.8)
A 		36
(3)
A 		6.5
(-2.8)
A 		6.7
(-2.8)
A 		30
avr 36.2
(3) 		8.3
(-3) 		18.6
(-0.8) 		24.4
(0.5) 		12.4
(-2.1) 		21.7
(-0.1) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 16
(3)
M 		0.4
(-3)
A 		0.6
(-2.9)
A 		5.6
(-1)
A 		16
B 26.8
(3)
A 		3.6
(-2.3)
A 		0.7
(-3)
A 		8.3
(-1.3)
A 		26
C 14.2
(3)
P 		3
(-2.1)
A 		1.1
(-3)
A 		9.9
(1)
A 		13
avr 19
(3) 		2.3
(-2.5) 		0.8
(-3) 		7.9
(-0.7) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 8.6
(2.5)
A 		0.5
(-3)
A 		4.5
(-0.3)
A 		8.8
(2.7)
M 		2.8
(-1.4)
A 		9.3
(3)
A 		9
B 14.8
(3)
A 		6
(-0.7)
A 		5.6
(-0.9)
A 		0.6
(-3)
A 		8.7
(0.4)
A 		7.6
(-0)
A 		14
C 7.2
(3)
A 		1.7
(-3)
A 		3
(-1.6)
A 		7.2
(3)
A 		2.1
(-2.6)
A 		2.2
(-2.5)
A 		6
avr 10.2
(3) 		2.7
(-3) 		4.4
(-1.6) 		5.5
(-0.8) 		4.5
(-1.6) 		6.4
(-0) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183751_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16173
Sequence Type Exemplar sequence
Representative Public ID F32A6.2 NCBI
Target Description F32A6.2 /REP_DB=WormBase Gene ID /WP=CE04470 /TR=Q19956 /GB=AAA81386.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076499
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000030573 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5298715:5306293:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076499 6/11 Cross Hyb Matching Probes None
SNAP00000030567 5/11 Cross Hyb Matching Probes None
F32A6.2 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5298715-5305020(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE68729 Hypothetical protein CBG14655 [Caenorhabditis briggsae] 1.0E-159
blast AAA81386 Hypothetical protein F32A6.2 [Caenorhabditis elegans] ref|NP_508900.3| F32A6.2 [Caenorhabditis elegans] 3.0E-78
blast AAA81389 Hypothetical protein F32A6.1 [Caenorhabditis elegans] ref|NP_508901.1| F32A6.1 [Caenorhabditis elegans] 5.0E-72
Sequence
Target Sequence 
>C. ELEGANS:183751_AT
gcaacttgcattacaattacgcggagagaaaacccgatatgcagattttgcaattgaaaa
acaacaagaacggcagaaggtcctgaacatcgaagccagaatcaaccgaatgaaaatcaa
tttgacggaggctcaagcggtcgctgacacattggatgaacaggcgttaatggaaaaatt
agagatagaggaaatgtcaaaacgaattcgaaaactagaagacgaacgggatcacaaaga
agtggatattgatgagaacatgaggcaagaacttgcgaaaattgagaaagatgtcgatga
gcgtaaaaccaatctcaaagacaaagtgggcggggaagttgtgtcaaatgttcagtaccg
aaaatatttagagcaataccgtgtgaaaagtgaagaacaaaaaaagaaaaggaaggaaat
tgagttgatgcataccgaggtggcagtgcttaaaagaacaattgacattgtttccaaaag
atacaataaattggaaacgcacattgaaagtattggcggagaaatagtagaagttttgaa
tgttccaacgaaatacgatcgtccgaaaactgcagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAACTTGCATTACAATTACGCGGA 698 319 630 Antisense
GAAAACCCGATATGCAGATTTTGCA 19 355 657 Antisense
CAGAAGGTCCTGAACATCGAAGCCA 521 203 703 Antisense
CATCGAAGCCAGAATCAACCGAATG 433 211 717 Antisense
ATTTGACGGAGGCTCAAGCGGTCGC 409 7 749 Antisense
GCGGTCGCTGACACATTGGATGAAC 203 293 766 Antisense
GATGTCGATGAGCGTAAAACCAATC 311 409 919 Antisense
AGTGGGCGGGGAAGTTGTGTCAAAT 505 59 954 Antisense
GTTGTGTCAAATGTTCAGTACCGAA 550 435 967 Antisense
GATGCATACCGAGGTGGCAGTGCTT 80 413 1056 Antisense
ATACGATCGTCCGAAAACTGCAGCT 590 23 1182 Antisense
Sequence Source Affymetrix Proprietary Database