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[183750_at]

Description T07E3.2 /REP_DB=WormBase Gene ID /WP=CE01383 /TR=Q22313 /GB=AAA21081.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 63      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 55.9
(0.3)
A 		32.4
(-1.6)
A 		90.7
(3)
A 		14.6
(-3)
A 		76
B 57.6
(3)
A 		39.4
(-0.5)
A 		33.5
(-1.6)
A 		26.5
(-3)
A 		31
C 48.6
(-1)
A 		37.3
(-2)
A 		24.7
(-3)
A 		97.3
(3)
A 		73
avr 54
(3) 		36.4
(-3) 		49.6
(1.5) 		46.1
(0.3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 9.1
(-3)
A 		82.3
(0.2)
A 		37.5
(-1.8)
A 		122.8
(1.9)
A 		147.1
(3)
A 		135.3
(2.5)
A 		138
B 54.4
(-2.5)
A 		122.9
(0.9)
A 		44.4
(-3)
A 		62.2
(-2.1)
P 		164.2
(2.9)
P 		165.3
(3)
M 		121
C 74.6
(-3)
A 		114
(1.3)
P 		130.2
(3)
P 		129.8
(3)
A 		88.5
(-1.5)
A 		82.5
(-2.1)
P 		56
avr 46
(-3) 		106.4
(1.2) 		70.7
(-1.3) 		104.9
(1) 		133.3
(3) 		127.7
(2.6) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 20.3
(2.1)
A 		7
(-1.6)
A 		23.7
(3)
A 		2.1
(-3)
A 		22
B 18.4
(3)
A 		9.7
(-1.1)
A 		7.8
(-2)
A 		5.6
(-3)
A 		13
C 16.1
(2.8)
A 		10.7
(-1.4)
A 		8.6
(-3)
A 		16.4
(3)
A 		8
avr 18.3
(3) 		9.1
(-2.4) 		13.4
(0.1) 		8
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 1.7
(-3)
A 		29.3
(0.9)
A 		8.2
(-2.1)
A 		31.1
(1.1)
A 		44.4
(3)
A 		32.9
(1.4)
A 		43
B 18.9
(-2.1)
A 		40.9
(0.2)
A 		10.8
(-3)
A 		16.5
(-2.4)
P 		66.7
(3)
P 		61.6
(2.5)
M 		56
C 27.7
(-1.9)
A 		34.8
(3)
P 		33.1
(1.8)
P 		26.1
(-3)
A 		28.6
(-1.3)
A 		27.6
(-2)
P 		9
avr 16.1
(-3) 		35
(0.7) 		17.4
(-2.7) 		24.6
(-1.3) 		46.6
(3) 		40.7
(1.8) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183750_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6685
Sequence Type Exemplar sequence
Representative Public ID T07E3.2 NCBI
Target Description T07E3.2 /REP_DB=WormBase Gene ID /WP=CE01383 /TR=Q22313 /GB=AAA21081.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066103(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066103 NCBI Caenorhabditis elegans T07E3.2 (T07E3.2) mRNA, complete cds. 11/11 None
GENEFINDER00000020893 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6905359:6907899:1 11/11 None
SNAP00000020884 ENSEMBL cdna:SNAP chromosome:CEL140:III:6905750:6907899:1 9/11 None
T07E3.2 ENSEMBL cdna:known chromosome:CEL140:III:6907534:6907899:1 gene:T07E3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6907532-6907898(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07E3.2
Entrez Gene 188232 Entrez gene
SwissProt Q22313 EMBL-EBI
WormBase CE01383 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA21081 Hypothetical protein T07E3.2 [Caenorhabditis elegans] ref|NP_498504.1| T07E3.2 [Caenorhabditis elegans] 2.0E-39
blast AAA21081 Hypothetical protein T07E3.2 [Caenorhabditis elegans] ref|NP_498504.1| T07E3.2 [Caenorhabditis elegans] 9.0E-39
blast AAA21082 Hypothetical protein T07E3.3 [Caenorhabditis elegans] ref|NP_498503.1| T07E3.3 [Caenorhabditis elegans] 8.0E-29
blast AAA21082 Hypothetical protein T07E3.3 [Caenorhabditis elegans] ref|NP_498503.1| T07E3.3 [Caenorhabditis elegans] 1.0E-23
blast AAA21081 Hypothetical protein T07E3.2 [Caenorhabditis elegans] ref|NP_498504.1| T07E3.2 [Caenorhabditis elegans] 2.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498504.1 1 5-24
T07E3.2 1 5-24
GENEFINDER00000020893 3 32-51,55-77,197-216
Sequence
Target Sequence 
>C. ELEGANS:183750_AT
acggagatctctttgttataatttttaatttctgcattatcactttttccgtttatcttg
ggattgggtgcaagaaaaagaaaaacaaagacttaataagtacaaggaaaaataagaccc
caataggatcaccagcttctacatcggaacatgagaaaattgtcattccaacgccaccac
ctgcacctccaatggttgctcgtgaagcaaatgacaacgaaacaatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGGAGATCTCTTTGTTATAATTTT 211 95 17 Antisense
GTTATAATTTTTAATTTCTGCATTA 524 445 31 Antisense
ATAAGACCCCAATAGGATCACCAGC 702 23 128 Antisense
AGACCCCAATAGGATCACCAGCTTC 29 71 131 Antisense
AATAGGATCACCAGCTTCTACATCG 100 173 138 Antisense
ATCACCAGCTTCTACATCGGAACAT 113 29 144 Antisense
CCAGCTTCTACATCGGAACATGAGA 651 271 148 Antisense
AGAAAATTGTCATTCCAACGCCACC 464 73 170 Antisense
TGCACCTCCAATGGTTGCTCGTGAA 583 577 198 Antisense
ACCTCCAATGGTTGCTCGTGAAGCA 621 87 201 Antisense
GAAGCAAATGACAACGAAACAATTA 212 339 220 Antisense
Sequence Source Affymetrix Proprietary Database