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[183749_at]

Description C41H7.3 /REP_DB=WormBase Gene ID /WP=CE08674 /TR=O17152 /GB=AAB70933.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 36      6grp_total > 45      4grp_total > 43      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 218.1
(1.2)
P 		248.2
(3)
P 		148.9
(-3)
P 		208.3
(0.6)
A 		99
B 220.3
(-1.4)
P 		305.5
(3)
P 		253.2
(0.3)
P 		190.2
(-3)
P 		115
C 232.3
(-2.1)
P 		285.3
(3)
P 		222.5
(-3)
P 		228.7
(-2.4)
P 		63
avr 223.6
(-1.7) 		279.7
(3) 		208.2
(-3) 		209.1
(-2.9) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 208.5
(1.3)
P 		247.4
(3)
P 		200.4
(0.9)
P 		110
(-3)
A 		141.2
(-1.6)
M 		167.7
(-0.5)
P 		137
B 225.5
(2.2)
P 		188.9
(0.8)
P 		247.2
(3)
P 		91.2
(-3)
A 		139.8
(-1.1)
P 		187.1
(0.7)
P 		156
C 182.5
(-0.1)
P 		255.1
(3)
P 		194.6
(0.4)
P 		115.3
(-3)
A 		138.8
(-2)
P 		185.8
(0)
P 		140
avr 205.5
(1.8) 		230.5
(3) 		214.1
(2.2) 		105.5
(-3) 		139.9
(-1.3) 		180.2
(0.6) 		125
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 79.4
(3)
P 		53.9
(-0.1)
P 		38.9
(-2)
P 		30.5
(-3)
A 		49
B 70.2
(2.1)
P 		75.5
(3)
P 		58.7
(0.1)
P 		40.5
(-3)
P 		35
C 76.9
(2.3)
P 		82
(3)
P 		77.6
(2.4)
P 		38.6
(-3)
P 		43
avr 75.5
(3) 		70.5
(2.2) 		58.4
(0.4) 		36.5
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 38.4
(-2)
P 		88
(3)
P 		43.7
(-1.4)
P 		27.9
(-3)
A 		42.6
(-1.5)
M 		40.8
(-1.7)
P 		60
B 78.5
(3)
P 		62.9
(1.3)
P 		60
(1)
P 		24.1
(-3)
A 		56.8
(0.6)
P 		69.8
(2)
P 		54
C 67.6
(1.9)
P 		77.8
(3)
P 		49.5
(-0.1)
P 		23.2
(-3)
A 		44.9
(-0.6)
P 		62.2
(1.3)
P 		55
avr 61.5
(1.3) 		76.2
(3) 		51.1
(0.1) 		25.1
(-3) 		48.1
(-0.3) 		57.6
(0.8) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183749_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5712
Sequence Type Exemplar sequence
Representative Public ID C41H7.3 NCBI
Target Description C41H7.3 /REP_DB=WormBase Gene ID /WP=CE08674 /TR=O17152 /GB=AAB70933.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062022(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062022 NCBI Caenorhabditis elegans C41H7.3 (C41H7.3) mRNA, complete cds. 11/11 None
SNAP00000027509 ENSEMBL cdna:SNAP chromosome:CEL140:II:3005846:3008531:1 11/11 None
GENEFINDER00000027515 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3005846:3007387:1 11/11 None
C41H7.3 ENSEMBL cdna:known chromosome:CEL140:II:3005841:3007945:1 gene:C41H7.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026854 3/11 Cross Hyb Matching Probes None
GENEFINDER00000027518 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3005844-3007386(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C41H7.3
Entrez Gene 173649 Entrez gene
SwissProt O17152 EMBL-EBI
WormBase CE08674 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO38668 Hypothetical protein C41H7.3 [Caenorhabditis elegans] ref|NP_494423.1| C41H7.3 [Caenorhabditis elegans] pir||T32323 hypothetical protein C41H7.3 - Caenorhabditis elegans 1.0E-179
blast AAB70937 Hypothetical protein C41H7.6 [Caenorhabditis elegans] ref|NP_494420.1| C41H7.6 [Caenorhabditis elegans] 6.0E-42
blast AAB70932 Hypothetical protein C41H7.4 [Caenorhabditis elegans] ref|NP_494422.1| C41H7.4 [Caenorhabditis elegans] 5.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:183749_AT
tgaggtgcccatcgtcgagaactatgaagggtatggaggttcggtggcgtcgatggctga
agccggaggttgtgagcatgcacagatggatacttctagaggttatgagcaatcacgtca
acaaaaagcagctatcggaggctatgagcaaccgcagatggctactcctagaggttatga
gcagcagcgtatgcaaagagaagctaccggaggctgtgaacaaccacaagtggcagctgc
gttctcgagcaactttgcaagtgcatcgacatcccgttcccggaagcgcccacactcgtc
aatcaagcaggaagattcggtatcctacactaaaatcactgaagacctcctgcaaaagaa
gccccacaagcaccgattcattcgtcaggcgttgttcaagacaattatggcactcgacga
cgatgaggttgagtacactgagttggccgatcttttcggcgatatcgccgagcagagcaa
tgtcgttcgtcgactcagactgcagcggcagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGGTGCCCATCGTCGAGAACTAT 63 569 576 Antisense
GTTCGGTGGCGTCGATGGCTGAAGC 420 439 614 Antisense
ACCGCAGATGGCTACTCCTAGAGGT 710 87 726 Antisense
AACCACAAGTGGCAGCTGCGTTCTC 127 149 797 Antisense
CTGCGTTCTCGAGCAACTTTGCAAG 374 237 812 Antisense
AAATCACTGAAGACCTCCTGCAAAA 515 117 908 Antisense
AAGCACCGATTCATTCGTCAGGCGT 323 151 943 Antisense
GACAATTATGGCACTCGACGACGAT 344 363 975 Antisense
AGTACACTGAGTTGGCCGATCTTTT 453 61 1007 Antisense
GAGCAGAGCAATGTCGTTCGTCGAC 575 389 1045 Antisense
GTCGACTCAGACTGCAGCGGCAGCA 171 473 1064 Antisense
Sequence Source Affymetrix Proprietary Database