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[183748_at]

Description C14C6.6 /REP_DB=WormBase Gene ID /WP=CE08161 /TR=O44670 /GB=AAB94264.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 41      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.8
(-3)
A 		11.4
(3)
A 		5.6
(-1.6)
A 		7.4
(-0.2)
A 		8
B 2.1
(-3)
A 		7.4
(2.1)
A 		8.3
(3)
A 		2.8
(-2.3)
A 		6
C 5
(-0.3)
A 		3.3
(-3)
A 		7.1
(3)
A 		4.6
(-0.9)
A 		4
avr 3.6
(-3) 		7.4
(3) 		7
(2.4) 		4.9
(-0.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 4.5
(-0.4)
A 		2
(-3)
A 		6.3
(1.4)
A 		2.5
(-2.5)
A 		7.8
(3)
A 		3.8
(-1.1)
A 		6
B 4.2
(-0.5)
A 		4.9
(0.1)
A 		1.9
(-2.7)
A 		5.8
(1)
A 		7.9
(3)
A 		1.6
(-3)
A 		6
C 2.5
(-3)
A 		4.8
(-0.1)
A 		7.2
(3)
A 		5
(0.2)
A 		5
(0.2)
A 		4.2
(-0.8)
A 		5
avr 3.7
(-2.2) 		3.9
(-1.9) 		5.1
(0.1) 		4.4
(-1.1) 		6.9
(3) 		3.2
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.4
(-1.7)
A 		2.5
(3)
A 		1.5
(-1.3)
A 		1.1
(-3)
A 		1
B 0.7
(-2.5)
A 		1.8
(2.5)
A 		1.9
(3)
A 		0.6
(-3)
A 		1
C 1.7
(0.2)
A 		0.9
(-2.6)
A 		2.5
(3)
A 		0.8
(-3)
A 		2
avr 1.3
(-0.5) 		1.7
(1.5) 		2
(3) 		0.8
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.8
(-2.3)
A 		0.7
(-2.6)
A 		1.4
(-0.2)
A 		0.6
(-3)
A 		2.3
(3)
A 		0.9
(-1.9)
A 		2
B 1.4
(-1)
A 		1.6
(-0.6)
A 		0.5
(-3)
A 		1.5
(-0.8)
A 		3.2
(3)
A 		0.6
(-2.8)
A 		3
C 0.9
(-3)
A 		1.5
(1)
A 		1.8
(3)
A 		1
(-2.3)
A 		1.6
(1.7)
A 		1.4
(0.3)
A 		1
avr 1
(-3) 		1.3
(-1.7) 		1.2
(-2.1) 		1
(-3) 		2.4
(3) 		1
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183748_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14826
Sequence Type Exemplar sequence
Representative Public ID C14C6.6 NCBI
Target Description C14C6.6 /REP_DB=WormBase Gene ID /WP=CE08161 /TR=O44670 /GB=AAB94264.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070840(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070840 NCBI Caenorhabditis elegans C14C6.6 (C14C6.6) mRNA, complete cds. 11/11 None
SNAP00000017694 ENSEMBL cdna:SNAP chromosome:CEL140:V:543618:547865:-1 10/11 None
GENEFINDER00000017708 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:545673:547865:-1 10/11 None
C14C6.6 ENSEMBL cdna:known chromosome:CEL140:V:545673:547877:-1 gene:C14C6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:545672-547877(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14C6.6
Entrez Gene 182603 Entrez gene
SwissProt O44670 EMBL-EBI
WormBase CE08161 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94264 Hypothetical protein C14C6.6 [Caenorhabditis elegans] ref|NP_503241.1| C14C6.6 [Caenorhabditis elegans] 0.0
blast AAB94266 Hypothetical protein C14C6.8 [Caenorhabditis elegans] ref|NP_503243.2| C14C6.8 [Caenorhabditis elegans] 1.0E-178
blast AAB94266 Hypothetical protein C14C6.8 [Caenorhabditis elegans] ref|NP_503243.2| C14C6.8 [Caenorhabditis elegans] 1.0E-176
blast AAB94266 Hypothetical protein C14C6.8 [Caenorhabditis elegans] ref|NP_503243.2| C14C6.8 [Caenorhabditis elegans] 1.0E-175
blast AAB69952 Hypothetical protein ZK488.5 [Caenorhabditis elegans] ref|NP_503257.1| ZK488.5 [Caenorhabditis elegans] 1.0E-174
blast CAE66132 Hypothetical protein CBG11356 [Caenorhabditis briggsae] 1.0E-172
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503241.1 1 13-35
C14C6.6 1 13-35
SNAP00000017694 1 12-34
GENEFINDER00000017708 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:183748_AT
tcaatttccaacctgcattttcgagtgaaatgggtgctaaaacacaacaatacaccagca
acctataaaaatgaaaagcaggtaatcgcaattttcattgtgaaaatttatatgaaactt
gttcagctgactcgtgaaatgctattcaacaagtatcaaaacacttctcgacttggacta
ctctgggaccagcctaaatgtataattcgtccggaaaaagttgcggctatgacgattcac
atcccagcagctatgtatagaggggaaaggtttaccgtggtcccagaagttatcgggttc
attaggcactatcgtaacgtggaggaaaaaatattccgtggtgctcttgctagaatgatg
gtgcatgctccattcaaaatttcaccaattgataagtggatcaacagtaaacttacgaag
agtataatacgacgggcgcgacatgtctacgacaccgctcaagtgagctgtgagcagaag
cagaaaatgattagtttcgagggaattccaaagccgtgtccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATTTCCAACCTGCATTTTCGAG 32 635 1063 Antisense
TGAAACTTGTTCAGCTGACTCGTGA 61 573 1175 Antisense
AAAACACTTCTCGACTTGGACTACT 314 129 1220 Antisense
TTGGACTACTCTGGGACCAGCCTAA 611 677 1235 Antisense
GTTGCGGCTATGACGATTCACATCC 614 439 1282 Antisense
GATTCACATCCCAGCAGCTATGTAT 396 431 1296 Antisense
GTTATCGGGTTCATTAGGCACTATC 53 447 1351 Antisense
AAATATTCCGTGGTGCTCTTGCTAG 291 117 1391 Antisense
TAATACGACGGGCGCGACATGTCTA 162 635 1487 Antisense
TGTCTACGACACCGCTCAAGTGAGC 219 557 1506 Antisense
CGAGGGAATTCCAAAGCCGTGTCCG 654 247 1560 Antisense
Sequence Source Affymetrix Proprietary Database