[Home] | [Total List]

[183747_at]

Description C27A2.5 /REP_DB=WormBase Gene ID /WP=CE04105 /TR=Q18238 /GB=AAK31463.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 76      6grp_total > 76      4grp_total > 48      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 350
1 2 3 4 range
A 38.7
(-2.6)
A 		194.1
(0.4)
P 		324.1
(3)
P 		20.1
(-3)
A 		304
B 32.1
(-2.5)
A 		187.7
(0.3)
P 		330.1
(3)
P 		7.7
(-3)
A 		322
C 7.8
(-3)
A 		214.6
(0.5)
P 		357.6
(3)
P 		15.1
(-2.9)
A 		350
avr 26.2
(-2.8) 		198.8
(0.4) 		337.3
(3) 		14.3
(-3) 		323

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 19.7
(-3)
A 		174.5
(-0.2)
P 		129.7
(-1)
P 		107.1
(-1.4)
P 		127.1
(-1)
P 		348.1
(3)
P 		328
B 51.3
(-3)
A 		142
(-1.2)
P 		129.1
(-1.4)
P 		85.6
(-2.3)
P 		117.7
(-1.7)
P 		350
(3)
P 		299
C 61
(-3)
P 		106.3
(-2)
P 		174.2
(-0.5)
P 		152.8
(-1)
P 		128.7
(-1.5)
P 		332.9
(3)
P 		272
avr 44
(-3) 		140.9
(-1.1) 		144.3
(-1) 		115.2
(-1.6) 		124.5
(-1.4) 		343.7
(3) 		300
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 14.1
(-2.2)
A 		42.1
(-0.1)
P 		84.7
(3)
P 		2.9
(-3)
A 		82
B 10.2
(-2.3)
A 		46.4
(0.6)
P 		76.5
(3)
P 		1.6
(-3)
A 		75
C 2.6
(-3)
A 		61.7
(-0.1)
P 		124.6
(3)
P 		2.6
(-3)
A 		122
avr 9
(-2.6) 		50.1
(0.1) 		95.3
(3) 		2.4
(-3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 3.6
(-3)
A 		62
(1.3)
P 		28.2
(-1.2)
P 		27.2
(-1.3)
P 		38.3
(-0.4)
P 		84.7
(3)
P 		81
B 17.9
(-3)
A 		47.3
(-1.4)
P 		31.4
(-2.3)
P 		22.7
(-2.7)
P 		47.8
(-1.4)
P 		130.5
(3)
P 		113
C 22.6
(-3)
P 		32.4
(-2.3)
P 		44.3
(-1.5)
P 		30.7
(-2.5)
P 		41.6
(-1.7)
P 		111.5
(3)
P 		89
avr 14.7
(-3) 		47.2
(-0.9) 		34.6
(-1.7) 		26.9
(-2.2) 		42.6
(-1.2) 		108.9
(3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183747_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5196
Sequence Type Exemplar sequence
Representative Public ID C27A2.5 NCBI
Target Description C27A2.5 /REP_DB=WormBase Gene ID /WP=CE04105 /TR=Q18238 /GB=AAK31463.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062535(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062535 NCBI Caenorhabditis elegans C27A2.5 (C27A2.5) mRNA, complete cds. 11/11 None
SNAP00000044052 ENSEMBL cdna:SNAP chromosome:CEL140:II:5068719:5069592:-1 9/11 None
GENEFINDER00000044060 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5068719:5069592:-1 10/11 None
C27A2.5 ENSEMBL cdna:known chromosome:CEL140:II:5068719:5069592:-1 gene:C27A2.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062543 1/11 Cross Hyb Matching Probes None
SNAP00000008314 1/11 Cross Hyb Matching Probes None
C04G6.10 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5068716-5069590(-) 79.89 100.0
Public Domain and Genome References
Gene Title
Ensembl C27A2.5
Entrez Gene 182949 Entrez gene
SwissProt Q18238 EMBL-EBI
WormBase CE04105 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6952 defense response inferred from electronic annotation QuickGO AmiGO
9613 response to pest, pathogen or parasite inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
5506 iron ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494936 C27A2.5 [Caenorhabditis elegans] gb|AAK31463.1| Hypothetical protein C27A2.5 [Caenorhabditis elegans] 4.0E-18
blast NP_494936 C27A2.5 [Caenorhabditis elegans] gb|AAK31463.1| Hypothetical protein C27A2.5 [Caenorhabditis elegans] 1.0E-16
blast CAE59035 Hypothetical protein CBG02315 [Caenorhabditis briggsae] 7.0E-13
blast CAE59035 Hypothetical protein CBG02315 [Caenorhabditis briggsae] 8.0E-13
blast AAK68161 Hypothetical protein C04G6.7 [Caenorhabditis elegans] ref|NP_494943.1| C04G6.7 [Caenorhabditis elegans] 1.0E-11
blast AAK68161 Hypothetical protein C04G6.7 [Caenorhabditis elegans] ref|NP_494943.1| C04G6.7 [Caenorhabditis elegans] 2.0E-11
Sequence
Target Sequence 
>C. ELEGANS:183747_AT
tccaccttcgccattctggcaataatcgcaatttctcaggttcaatcagcagtactacca
gtgtcctcaaaagaagtagcattaataacatcatctgcttcaaccacttcatcatctgaa
acatcaattgatacattaggatcatccagagttaaaagacaaggaggatgtggttgctgt
ggatgcggatgcggatgctgcggatgtggtggaggaggtggaggaggatgcggatgttgc
tgttgtagaccaaaatgctgctgctgttgccgccgttgctgtacatgttgccgtacttgc
tgttgtacaagatgttgtacttgctgccgtccatgttgttgtggatgtggatgtggatgt
ggatgttgtggatgcggaggtggaggacgtaaacgtcgttctcttcagaatctccgtatt
gctttggctaacaaaatcgaaggaatcgccaaagtcgtgaagggatccgctgtagaagct
tcagttatgaacgcattggctcctgtcaatgatgctacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACCTTCGCCATTCTGGCAATAA 178 589 31 Antisense
AATCGCAATTTCTCAGGTTCAATCA 429 167 54 Antisense
AATCAGCAGTACTACCAGTGTCCTC 181 171 74 Antisense
AATAACATCATCTGCTTCAACCACT 538 171 114 Antisense
GGAGGATGCGGATGTTGCTGTTGTA 144 517 253 Antisense
TTCTCTTCAGAATCTCCGTATTGCT 222 691 429 Antisense
AATCTCCGTATTGCTTTGGCTAACA 18 169 439 Antisense
GCCAAAGTCGTGAAGGGATCCGCTG 584 277 478 Antisense
GGGATCCGCTGTAGAAGCTTCAGTT 133 497 492 Antisense
AGTTATGAACGCATTGGCTCCTGTC 644 63 513 Antisense
ATTGGCTCCTGTCAATGATGCTACG 434 3 525 Antisense
Sequence Source Affymetrix Proprietary Database