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[183746_at]

Description W06D12.4 /REP_DB=WormBase Gene ID /WP=CE16552 /TR=O45893 /GB=CAB04925.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 03      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 46.4
(-0.8)
A 		15.6
(-3)
A 		22.3
(-2.5)
A 		98.8
(3)
A 		83
B 52.7
(-0.7)
A 		44.5
(-3)
A 		54.4
(-0.2)
A 		65.5
(3)
A 		21
C 55.4
(-2.8)
A 		64.6
(-2.2)
A 		51.5
(-3)
A 		145.9
(3)
A 		94
avr 51.5
(-2) 		41.6
(-3) 		42.7
(-2.9) 		103.4
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 51.4
(1.3)
A 		28.2
(-1.1)
A 		68.3
(3)
A 		32.3
(-0.6)
A 		9.1
(-3)
A 		40.3
(0.2)
A 		59
B 6.5
(-3)
A 		58.9
(0.7)
A 		28.6
(-1.5)
A 		8
(-2.9)
A 		44.6
(-0.3)
A 		92.2
(3)
A 		86
C 58.4
(2.8)
A 		45.4
(1)
A 		59.8
(3)
A 		27.5
(-1.5)
A 		16.7
(-3)
A 		46.9
(1.2)
A 		43
avr 38.8
(-0.4) 		44.2
(0.5) 		52.2
(1.8) 		22.6
(-3) 		23.5
(-2.9) 		59.8
(3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 16.9
(3)
A 		3.4
(-3)
A 		5.8
(-1.9)
A 		14.5
(1.9)
A 		14
B 16.8
(3)
A 		11
(-3)
A 		12.6
(-1.3)
A 		14
(0.1)
A 		6
C 18.3
(-2.6)
A 		18.6
(-2.4)
A 		17.9
(-3)
A 		24.6
(3)
A 		7
avr 17.3
(2.6) 		11
(-3) 		12.1
(-2) 		17.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 9.5
(0.3)
A 		10
(0.6)
A 		14.9
(3)
A 		8.2
(-0.3)
A 		2.8
(-3)
A 		9.8
(0.5)
A 		12
B 2.2
(-3)
A 		19.6
(0.3)
A 		7
(-2.1)
A 		2.1
(-3)
A 		18.1
(-0)
A 		34.4
(3)
A 		32
C 21.7
(3)
A 		13.8
(0.1)
A 		15.2
(0.6)
A 		5.5
(-3)
A 		5.4
(-3)
A 		15.7
(0.8)
A 		16
avr 11.1
(-0.6) 		14.5
(0.8) 		12.4
(-0.1) 		5.3
(-3) 		8.8
(-1.6) 		20
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183746_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13619
Sequence Type Exemplar sequence
Representative Public ID W06D12.4 NCBI
Target Description W06D12.4 /REP_DB=WormBase Gene ID /WP=CE16552 /TR=O45893 /GB=CAB04925.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075080(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075080 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-77) (str-77) mRNA, complete cds. 11/11 None
SNAP00000010707 ENSEMBL cdna:SNAP chromosome:CEL140:V:17718854:17723869:1 11/11 None
GENEFINDER00000010716 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17721523:17727223:1 11/11 None
W06D12.4 ENSEMBL cdna:known chromosome:CEL140:V:17721523:17723869:1 gene:W06D12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17721522-17723869(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-77
Ensembl W06D12.4
Entrez Gene 189247 Entrez gene
SwissProt O45893 EMBL-EBI
WormBase CE16552 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04925 Hypothetical protein W06D12.4 [Caenorhabditis elegans] ref|NP_507481.1| Seven TM Receptor family member (str-77) [Caenorhabditis elegans] 0.0
blast CAE61730 Hypothetical protein CBG05681 [Caenorhabditis briggsae] 1.0E-151
blast CAB04925 Hypothetical protein W06D12.4 [Caenorhabditis elegans] ref|NP_507481.1| Seven TM Receptor family member (str-77) [Caenorhabditis elegans] 5.0E-97
blast CAE61730 Hypothetical protein CBG05681 [Caenorhabditis briggsae] 3.0E-61
blast CAE66411 Hypothetical protein CBG11678 [Caenorhabditis briggsae] 1.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.1E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.1E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507481.1 7 13-32,44-63,94-116,129-147,208-230,253-275,290-312
W06D12.4 7 13-32,44-63,94-116,129-147,208-230,253-275,290-312
SNAP00000010707 5 49-68,80-99,169-191,214-236,251-273
GENEFINDER00000010716 7 13-32,44-63,94-116,129-147,208-230,253-275,290-312
Sequence
Target Sequence 
>C. ELEGANS:183746_AT
ggacgagatcacctatatggccgccagatttgtgaaatattccgaagaagcgggggcgtt
aactattgattggcgccaagttggattctattttgcagccacgaaaactatgattttgag
ctttattatattgatttattgcggaattgctatcactaaaactatacggaaggacctgaa
aagtttaagatccaaggaacggctgaggcttgagcttaatctgtttttggcgcttattgt
gcagacagtaatccccgttctcatgatctactgcccgttccttctcatgtggaatttccc
cgttttcctcggcatagaaaccgcccgtctcaccggaatgggcgtggccttgtatccggg
aatcgacccgttggctattattttcatagtggccaactaccgaagagcacttcttaagcc
tttcagaaaagtttttttggttcaaccggcaagtagtaccgtcagagatatctcttcgac
aagccgtgctttggcccaagttgccggaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACGAGATCACCTATATGGCCGCC 697 523 549 Antisense
GTTGGATTCTATTTTGCAGCCACGA 121 437 628 Antisense
GAGCTTAATCTGTTTTTGGCGCTTA 76 389 760 Antisense
TATTGTGCAGACAGTAATCCCCGTT 457 663 783 Antisense
TCATGTGGAATTTCCCCGTTTTCCT 295 621 833 Antisense
CCGCCCGTCTCACCGGAATGGGCGT 76 261 869 Antisense
CGTGGCCTTGTATCCGGGAATCGAC 300 239 891 Antisense
GTGGCCAACTACCGAAGAGCACTTC 254 491 937 Antisense
AAGAGCACTTCTTAAGCCTTTCAGA 203 153 951 Antisense
TCTCTTCGACAAGCCGTGCTTTGGC 224 609 1019 Antisense
TGCTTTGGCCCAAGTTGCCGGAAAT 475 579 1035 Antisense
Sequence Source Affymetrix Proprietary Database