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[183745_at]

Description F09F7.1 /REP_DB=WormBase Gene ID /WP=CE00692 /TR=Q19280 /GB=AAA50694.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 45      4grp_high_8_8 > 03      6grp_total > 0      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 400
1 2 3 4 range
A 237.9
(-0.9)
P 		100
(-3)
P 		124.2
(-2.6)
A 		500
(3)
P 		400
B 252.1
(0.4)
P 		124.9
(-3)
M 		135.4
(-2.7)
P 		346.8
(3)
P 		222
C 248.3
(-0.1)
P 		111.4
(-2.9)
A 		104.4
(-3)
A 		401.3
(3)
P 		297
avr 246.1
(-0.4) 		112.1
(-3) 		121.3
(-2.8) 		416
(3) 		304

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 160.8
(-2.1)
A 		239.2
(3)
P 		154.3
(-2.5)
P 		171.2
(-1.4)
P 		147.2
(-3)
P 		196
(0.2)
P 		92
B 126.9
(-2.2)
P 		166.7
(3)
P 		127.8
(-2.1)
P 		136.7
(-0.9)
P 		121.3
(-2.9)
P 		120.8
(-3)
P 		46
C 187.8
(3)
P 		173
(1.4)
P 		185.9
(2.8)
P 		156.3
(-0.4)
A 		131.5
(-3)
P 		180.9
(2.3)
P 		56
avr 158.5
(-0.5) 		193
(3) 		156
(-0.7) 		154.7
(-0.8) 		133.3
(-3) 		165.9
(0.3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 86.6
(3)
P 		21.7
(-3)
P 		32.5
(-2)
A 		73.2
(1.8)
P 		65
B 80.4
(3)
P 		30.8
(-3)
M 		31.4
(-2.9)
P 		73.9
(2.2)
P 		50
C 82.2
(3)
P 		32
(-3)
A 		36.4
(-2.5)
A 		67.7
(1.3)
P 		50
avr 83.1
(3) 		28.2
(-3) 		33.4
(-2.4) 		71.6
(1.7) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 29.6
(-3)
A 		85.1
(3)
P 		33.6
(-2.6)
P 		43.4
(-1.5)
P 		44.4
(-1.4)
P 		47.7
(-1)
P 		56
B 44.2
(0.2)
P 		55.5
(3)
P 		31
(-3)
P 		36.2
(-1.7)
P 		49.3
(1.5)
P 		45
(0.4)
P 		25
C 69.6
(3)
P 		52.8
(0.4)
P 		47.3
(-0.5)
P 		31.4
(-3)
A 		42.6
(-1.2)
P 		60.5
(1.6)
P 		38
avr 47.8
(-0.6) 		64.5
(3) 		37.3
(-2.9) 		37
(-3) 		45.4
(-1.2) 		51.1
(0.1) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183745_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6196
Sequence Type Exemplar sequence
Representative Public ID F09F7.1 NCBI
Target Description F09F7.1 /REP_DB=WormBase Gene ID /WP=CE00692 /TR=Q19280 /GB=AAA50694.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065794(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065794 NCBI Caenorhabditis elegans F09F7.1 (F09F7.1) mRNA, complete cds. 11/11 None
SNAP00000025402 ENSEMBL cdna:SNAP chromosome:CEL140:III:5573948:5577051:1 9/11 None
GENEFINDER00000025409 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5574855:5577575:1 10/11 None
F09F7.1 ENSEMBL cdna:known chromosome:CEL140:III:5573948:5576638:1 gene:F09F7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5572037-5576637(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09F7.1
Entrez Gene 184259 Entrez gene
SwissProt Q19280 EMBL-EBI
WormBase CE29258 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498195 F09F7.1 [Caenorhabditis elegans] gb|AAA50694.2| Hypothetical protein F09F7.1 [Caenorhabditis elegans] 1.0E-165
blast CAE64306 Hypothetical protein CBG08983 [Caenorhabditis briggsae] 1.0E-152
blast NP_498195 F09F7.1 [Caenorhabditis elegans] gb|AAA50694.2| Hypothetical protein F09F7.1 [Caenorhabditis elegans] 1.0E-113
blast CAE64306 Hypothetical protein CBG08983 [Caenorhabditis briggsae] 1.0E-112
blast NP_498195 F09F7.1 [Caenorhabditis elegans] gb|AAA50694.2| Hypothetical protein F09F7.1 [Caenorhabditis elegans] 1.0E-109
blast CAE64306 Hypothetical protein CBG08983 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498195.1 1 224-246
F09F7.1 1 224-246
GENEFINDER00000025409 1 162-184
Sequence
Target Sequence 
>C. ELEGANS:183745_AT
gaaaggagggcctacacggcttcattgtctcaatcgcaattgtcaagaacctctatatgc
atatgcactcgccaagtgacacacaacttactgaaagagctgaagctttctgccgagcac
ttgaaggacgctgggcactcggagactgtggaaactcggttattgtgtttgtatggcagc
attataaaaagatggtaatatggccggctcgacttgcagagaaatacataactgcagagg
aaaggaaggctattctaacaaaagttaatgattatgcacagactgatgattggtttccgg
cactttctacaattattaaagaaatatcaaacgagctgaatggggatccagagccgagat
tcgacactggcaccttatcacttttgttatcagttggcttagcagttgggcttacggtat
ttattacatgctgtgtgtgcgcattccgatgttgcggaaacgtaaaaacacgagagcgac
ggaagagtgtcgaacgagcaatggacaatctacggaacagcgtgatccgtcgaggcagtc
agtttcgcaggtttgattgtcagtgcattcccatgatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGGAGGGCCTACACGGCTTCAT 45 361 239 Antisense
ACGGCTTCATTGTCTCAATCGCAAT 147 97 254 Antisense
GCATATGCACTCGCCAAGTGACACA 82 309 297 Antisense
TGAAGCTTTCTGCCGAGCACTTGAA 24 575 339 Antisense
CACTTGAAGGACGCTGGGCACTCGG 89 195 356 Antisense
AAGATGGTAATATGGCCGGCTCGAC 11 155 427 Antisense
CTGATGATTGGTTTCCGGCACTTTC 117 237 521 Antisense
AGAGCCGAGATTCGACACTGGCACC 10 69 588 Antisense
TACATGCTGTGTGTGCGCATTCCGA 117 645 663 Antisense
ATCCGTCGAGGCAGTCAGTTTCGCA 388 37 763 Antisense
GATTGTCAGTGCATTCCCATGATGT 375 435 793 Antisense
Sequence Source Affymetrix Proprietary Database