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[183742_at]

Description F40H6.1 /REP_DB=WormBase Gene ID /WP=CE01278 /TR=Q20258 /GB=AAA62518.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 23.9
(-1.5)
A 		30
(-0)
A 		42.7
(3)
A 		17.6
(-3)
A 		25
B 15.4
(-1.2)
A 		8.5
(-3)
A 		31.7
(3)
A 		16.2
(-1)
A 		23
C 27
(-3)
A 		40.8
(-0.5)
A 		36.4
(-1.3)
A 		60.6
(3)
A 		34
avr 22.1
(-3) 		26.4
(-1.3) 		36.9
(3) 		31.5
(0.8) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 77.5
(-0.8)
A 		13.7
(-3)
A 		44.2
(-2)
A 		37.3
(-2.2)
A 		175
(2.5)
P 		190.8
(3)
P 		177
B 8.6
(-3)
A 		34.9
(-2.3)
A 		31.1
(-2.4)
A 		28.3
(-2.5)
A 		188.6
(1.6)
P 		242.2
(3)
P 		234
C 24.9
(-2.5)
A 		4.6
(-3)
A 		30.4
(-2.4)
A 		25.6
(-2.5)
A 		168.8
(0.7)
P 		270.9
(3)
P 		266
avr 37
(-2.5) 		17.7
(-3) 		35.2
(-2.5) 		30.4
(-2.6) 		177.5
(1.4) 		234.6
(3) 		217
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 8.7
(1.3)
A 		6.5
(-0.3)
A 		11.2
(3)
A 		2.6
(-3)
A 		9
B 4.9
(0.2)
A 		2.1
(-3)
A 		7.3
(3)
A 		3.4
(-1.5)
A 		5
C 8.9
(-3)
A 		11.7
(1.4)
A 		12.7
(3)
A 		10.2
(-0.9)
A 		4
avr 7.5
(-0.5) 		6.8
(-1.3) 		10.4
(3) 		5.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 14.3
(-1.8)
A 		4.9
(-3)
A 		9.6
(-2.4)
A 		9.4
(-2.4)
A 		52.8
(3)
P 		46.5
(2.2)
P 		48
B 3
(-3)
A 		11.6
(-2.4)
A 		7.5
(-2.7)
A 		7.5
(-2.7)
A 		76.6
(2.1)
P 		90.3
(3)
P 		87
C 9.2
(-2.5)
A 		1.4
(-3)
A 		7.7
(-2.6)
A 		5.1
(-2.8)
A 		54.6
(0.6)
P 		90.7
(3)
P 		89
avr 8.8
(-2.8) 		6
(-3) 		8.3
(-2.8) 		7.3
(-2.9) 		61.3
(1.8) 		75.8
(3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183742_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7661
Sequence Type Exemplar sequence
Representative Public ID F40H6.1 NCBI
Target Description F40H6.1 /REP_DB=WormBase Gene ID /WP=CE01278 /TR=Q20258 /GB=AAA62518.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065918(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065918 NCBI Caenorhabditis elegans F40H6.1 (F40H6.1) mRNA, complete cds. 11/11 None
GENEFINDER00000035893 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6057061:6058332:1 11/11 None
F40H6.1 ENSEMBL cdna:known chromosome:CEL140:III:6057021:6058334:1 gene:F40H6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035890 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6057059-6058331(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40H6.1
Entrez Gene 175856 Entrez gene
SwissProt Q20258 EMBL-EBI
WormBase CE01278 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA62518 Hypothetical protein F40H6.1 [Caenorhabditis elegans] ref|NP_498319.1| F40H6.1 [Caenorhabditis elegans] 9.0E-78
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498319.1 4 7-29,66-88,101-123,138-160
F40H6.1 4 7-29,66-88,101-123,138-160
GENEFINDER00000035893 4 7-29,66-88,101-123,138-160
Sequence
Target Sequence 
>C. ELEGANS:183742_AT
cttgccgtgcttctcggaatcggaatcatcatccacatggtcggaattttcagcccatgg
tggacttatagaaaaaaattggtgcgtgtcgcaggcgacgatgacgaatacgaccactgg
ggagttactacatttggagccttgccggtcagtggccagttcgcagcaattctgttggat
gtgtcattgatcgcttacctggcagttcttggagttcttggtttcatttggtggcaagtt
agcaacaatggctacacccagttcattcgtaaaatgtttttcggttttctgggatgctcg
ggaacaattatcgggactactattcttgcaacaatttcttttgcgattgcaaaagattct
aatatgtctatgggatcctcgatgtggttttgcctggtgggtggagtgttcttcaatggt
gcagctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGCCGTGCTTCTCGGAATCGGAA 438 217 40 Antisense
GAGTTACTACATTTGGAGCCTTGCC 103 397 161 Antisense
AGTGGCCAGTTCGCAGCAATTCTGT 451 57 190 Antisense
GGATGTGTCATTGATCGCTTACCTG 342 515 216 Antisense
TTACCTGGCAGTTCTTGGAGTTCTT 486 681 234 Antisense
GGAGTTCTTGGTTTCATTTGGTGGC 558 517 250 Antisense
AACAATGGCTACACCCAGTTCATTC 97 133 283 Antisense
GTTTTTCGGTTTTCTGGGATGCTCG 571 447 315 Antisense
TATCGGGACTACTATTCTTGCAACA 396 657 348 Antisense
TCCTCGATGTGGTTTTGCCTGGTGG 359 593 415 Antisense
GGAGTGTTCTTCAATGGTGCAGCTT 215 517 442 Antisense
Sequence Source Affymetrix Proprietary Database