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[183741_s_at]

Description Y73F4A.1 /REP_DB=WormBase Gene ID /WP=CE20367 /TR=Q9XWC2 /GB=CAA21755.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 62      6grp_highest_nonorm > 53      6grp_total > 62      4grp_total > 60      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 346
1 2 3 4 range
A 271.4
(0.8)
P 		396.4
(3)
P 		305.7
(1.4)
P 		59.9
(-3)
A 		337
B 295
(1.4)
P 		384.8
(3)
P 		325.2
(1.9)
P 		53.4
(-3)
A 		331
C 364.1
(2.5)
P 		332
(1.9)
P 		391.9
(3)
P 		50.7
(-3)
A 		341
avr 310.2
(1.8) 		371.1
(3) 		340.9
(2.4) 		54.7
(-3) 		316

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1683
1 2 3 4 5 6 range
A 367.3
(-2.4)
P 		639.5
(-1.4)
P 		1870.2
(3)
P 		1201.2
(0.6)
P 		486
(-1.9)
P 		187.5
(-3)
P 		1683
B 373.5
(-2.3)
P 		643.5
(-1.1)
P 		1593
(3)
P 		922.5
(0.1)
P 		698.4
(-0.9)
P 		202.5
(-3)
P 		1391
C 314.5
(-2.7)
P 		500.1
(-1.6)
P 		1155.7
(2.6)
P 		1224.7
(3)
P 		577.2
(-1.1)
P 		271
(-3)
P 		954
avr 351.8
(-2.4) 		594.4
(-1.3) 		1539.6
(3) 		1116.1
(1.1) 		587.2
(-1.3) 		220.3
(-3) 		1319
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 98.8
(3)
P 		86
(2.1)
P 		79.9
(1.7)
P 		8.8
(-3)
A 		90
B 94.1
(2.9)
P 		95
(3)
P 		75.4
(1.6)
P 		11.4
(-3)
A 		84
C 120.5
(2.2)
P 		95.4
(1.1)
P 		136.6
(3)
P 		8.6
(-3)
A 		128
avr 104.5
(3) 		92.1
(2.2) 		97.3
(2.5) 		9.6
(-3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 362
1 2 3 4 5 6 range
A 67.7
(-2.6)
P 		227.4
(0)
P 		407.3
(3)
P 		304.7
(1.3)
P 		146.7
(-1.3)
P 		45.7
(-3)
P 		362
B 129.9
(-2)
P 		214.2
(-0.3)
P 		386.8
(3)
P 		244.3
(0.3)
P 		283.8
(1)
P 		75.5
(-3)
P 		311
C 116.6
(-2.2)
P 		152.6
(-1.2)
P 		294.1
(3)
P 		246.3
(1.6)
P 		186.8
(-0.2)
P 		90.7
(-3)
P 		203
avr 104.7
(-2.3) 		198.1
(-0.4) 		362.7
(3) 		265.1
(1) 		205.8
(-0.2) 		70.6
(-3) 		292
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183741_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8858
Sequence Type Exemplar sequence
Representative Public ID Y73F4A.1 NCBI
Target Description Y73F4A.1 /REP_DB=WormBase Gene ID /WP=CE20367 /TR=Q9XWC2 /GB=CAA21755.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069173(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069173 NCBI Caenorhabditis elegans Y73F4A.1 (Y73F4A.1) mRNA, complete cds. 11/11 None
SNAP00000041258 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9044644:9045274:-1 9/11 None
Y73F4A.1 ENSEMBL cdna:known chromosome:CEL140:IV:9043974:9045295:-1 gene:Y73F4A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9044068-9045280(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73F4A.1
Entrez Gene 177723 Entrez gene
SwissProt Q9XWC2 EMBL-EBI
WormBase CE20367 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6584 catecholamine metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4500 dopamine beta-monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21755 Hypothetical protein Y73F4A.1 [Caenorhabditis elegans] ref|NP_501574.1| Y73F4A.1 [Caenorhabditis elegans] 8.0E-73
blast CAA21755 Hypothetical protein Y73F4A.1 [Caenorhabditis elegans] ref|NP_501574.1| Y73F4A.1 [Caenorhabditis elegans] 4.0E-62
blast CAE74095 Hypothetical protein CBG21755 [Caenorhabditis briggsae] 2.0E-51
blast CAE74095 Hypothetical protein CBG21755 [Caenorhabditis briggsae] 2.0E-44
blast CAE74092 Hypothetical protein CBG21752 [Caenorhabditis briggsae] 4.0E-14
blast CAE74092 Hypothetical protein CBG21752 [Caenorhabditis briggsae] 2.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR005018 EMBL-EBI DOMON domain 6.6E-34
Sequence
Target Sequence 
>C. ELEGANS:183741_S_AT
gatggacttcgatagcttttggagatggacctggaatgaacaacctggaatcgattatat
tttcccgtagagaagacaatgtgataacaacaaattctggatatacaccaaaaaagaaga
aagtcgtggtggatgatgtttcttatgtgacagttaatgatgtccaaatcaccgggaaca
agctgaaagttacagtgagccgacctttgggtccagctggtccaagaaacttctcattgg
atcagtgtttgaattggatggttgtaccgggaggaagcttaagcaacggaaaattcaaga
aacatcatggcaaaatttttttcatcaaggacgtctgtgctgcaaaatgtactgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGACTTCGATAGCTTTTGGAGA 585 405 167 Antisense
GACCTGGAATGAACAACCTGGAATC 242 383 194 Antisense
GAATCGATTATATTTTCCCGTAGAG 564 327 214 Antisense
GTCGTGGTGGATGATGTTTCTTATG 156 473 289 Antisense
GATGTCCAAATCACCGGGAACAAGC 642 395 325 Antisense
TACAGTGAGCCGACCTTTGGGTCCA 44 643 357 Antisense
GGGTCCAGCTGGTCCAAGAAACTTC 388 493 375 Antisense
AGAAACTTCTCATTGGATCAGTGTT 170 73 391 Antisense
GATGGTTGTACCGGGAGGAAGCTTA 105 407 423 Antisense
TTTCATCAAGGACGTCTGTGCTGCA 464 671 486 Antisense
GTCTGTGCTGCAAAATGTACTGCTG 93 471 499 Antisense
Sequence Source Affymetrix Proprietary Database