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[183739_at]

Description F07C3.3 /REP_DB=WormBase Gene ID /WP=CE07025 /TR=Q19148 /GB=AAG24028.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 63      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 50.6
(3)
A 		30.9
(-0.1)
A 		44.9
(2.1)
A 		11.9
(-3)
A 		39
B 91.9
(3)
A 		46.2
(-1.5)
A 		48.3
(-1.3)
A 		31.4
(-3)
A 		61
C 45.1
(1)
A 		33.5
(-3)
A 		51.1
(3)
A 		33.9
(-2.9)
A 		18
avr 62.5
(3) 		36.9
(-1.2) 		48.1
(0.7) 		25.7
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 27.9
(-1)
A 		69.5
(3)
A 		41.3
(0.3)
A 		24.4
(-1.3)
A 		6.6
(-3)
A 		35.1
(-0.3)
A 		63
B 55.5
(3)
A 		26.8
(-0.2)
A 		16.9
(-1.3)
A 		39.5
(1.2)
A 		5.8
(-2.5)
A 		1.5
(-3)
A 		54
C 40.6
(1.7)
A 		51.1
(3)
A 		44.3
(2.1)
A 		6.8
(-2.6)
A 		25
(-0.3)
A 		3.4
(-3)
A 		48
avr 41.3
(1.7) 		49.1
(3) 		34.2
(0.6) 		23.6
(-1.2) 		12.5
(-3) 		13.3
(-2.9) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 18.4
(3)
A 		6.7
(-1.2)
A 		11.7
(0.6)
A 		1.7
(-3)
A 		17
B 29.3
(3)
A 		11.4
(-1.8)
A 		11.2
(-1.8)
A 		6.7
(-3)
A 		23
C 14.9
(1.6)
A 		9.6
(-1.1)
A 		17.8
(3)
A 		5.7
(-3)
A 		12
avr 20.9
(3) 		9.2
(-1.3) 		13.6
(0.3) 		4.7
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 5.1
(-2.2)
A 		24.7
(3)
A 		9
(-1.1)
A 		6.2
(-1.9)
A 		2
(-3)
A 		8.6
(-1.3)
A 		23
B 19.3
(3)
A 		8.9
(-0.3)
A 		4.1
(-1.9)
A 		10.5
(0.2)
A 		2.3
(-2.5)
A 		0.6
(-3)
A 		19
C 15.1
(2.8)
A 		15.6
(3)
A 		11.3
(1.2)
A 		1.4
(-2.9)
A 		8.1
(-0.1)
A 		1.1
(-3)
A 		15
avr 13.2
(1.5) 		16.4
(3) 		8.1
(-0.8) 		6
(-1.8) 		4.1
(-2.7) 		3.4
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183739_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11833
Sequence Type Exemplar sequence
Representative Public ID F07C3.3 NCBI
Target Description F07C3.3 /REP_DB=WormBase Gene ID /WP=CE07025 /TR=Q19148 /GB=AAG24028.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072990(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072990 NCBI Caenorhabditis elegans F07C3.3 (F07C3.3) mRNA, complete cds. 11/11 None
F07C3.3 ENSEMBL cdna:known chromosome:CEL140:V:9230295:9236676:-1 gene:F07C3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009703 7/11 Cross Hyb Matching Probes None
SNAP00000009704 4/11 Cross Hyb Matching Probes None
GENEFINDER00000009723 7/11 Cross Hyb Matching Probes None
GENEFINDER00000009726 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9230294-9236676(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07C3.3
Entrez Gene 184124 Entrez gene
SwissProt Q19148 EMBL-EBI
WormBase CE07025 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_505391 F07C3.3 [Caenorhabditis elegans] gb|AAG24028.1| Hypothetical protein F07C3.3 [Caenorhabditis elegans] 0.0
blast CAE72136 Hypothetical protein CBG19234 [Caenorhabditis briggsae] 0.0
blast CAE64541 Hypothetical protein CBG09284 [Caenorhabditis briggsae] 4.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR004245 EMBL-EBI Protein of unknown function DUF229 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:183739_AT
tgacgttcacaaaacattgcacgatattgttcacatgagattgggagacaacaaagcaaa
atccgatgagggacgaggaattagtctatttgatgcaattcccaacacaagaacatgtgc
tgatgtgatcgttccagaaaacttttgtatgtgtatgattgatgtgtcaagtatcgccaa
cccgttaccaaatttcaataagaaaaaacctacggatcagaaaatggatcaattcaatac
attgaaaagttggctgaaaacggagaatcttgatgactgtgtagatgtgagcagtttaga
aacaggccaaacttttcaagaaatggctatcaatccattgagtcgatttggattgcgaac
caagaacaatgcttcaatgttggaattgatgaaggagagaaataagaagaatccagagtt
aaattatatcaactttgaattttctgtgagtggtacgtacaaaaatggtgaaccattgag
tatgcttgtccgaacggagttatttgttgaaaagagcacaagccagctaatatttgagcc
aatgatacaggaaatgcctgcatcgtgtcgttttgtatccatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACGTTCACAAAACATTGCACGAT 538 569 1770 Antisense
GTCTATTTGATGCAATTCCCAACAC 474 469 1853 Antisense
CATGTGCTGATGTGATCGTTCCAGA 494 209 1883 Antisense
TGATGTGTCAAGTATCGCCAACCCG 372 565 1929 Antisense
ATGGCTATCAATCCATTGAGTCGAT 157 51 2092 Antisense
TTGAGTCGATTTGGATTGCGAACCA 47 697 2107 Antisense
TGAATTTTCTGTGAGTGGTACGTAC 563 575 2205 Antisense
TTGAGTATGCTTGTCCGAACGGAGT 244 681 2245 Antisense
GCACAAGCCAGCTAATATTTGAGCC 497 313 2285 Antisense
GGAAATGCCTGCATCGTGTCGTTTT 282 527 2319 Antisense
GCATCGTGTCGTTTTGTATCCATAT 674 309 2329 Antisense
Sequence Source Affymetrix Proprietary Database