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[183738_at]

Description C33H5.1 /REP_DB=WormBase Gene ID /WP=CE04145 /TR=Q18417 /GB=AAA82262.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 28
(1.1)
A 		2.1
(-3)
A 		24
(0.5)
A 		39.8
(3)
A 		38
B 25.4
(-0.9)
A 		25.5
(-0.9)
A 		13
(-3)
A 		48.3
(3)
A 		35
C 9.7
(-3)
A 		20.8
(-1.8)
A 		20.5
(-1.9)
A 		66.7
(3)
A 		57
avr 21
(-2.2) 		16.1
(-3) 		19.2
(-2.5) 		51.6
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 672
1 2 3 4 5 6 range
A 43.8
(-3)
A 		548.6
(3)
P 		416.3
(1.4)
P 		271.3
(-0.3)
P 		235
(-0.7)
P 		66.1
(-2.7)
P 		505
B 19
(-3)
A 		683.4
(3)
P 		388.3
(0.3)
P 		306
(-0.4)
P 		220.7
(-1.2)
P 		91.2
(-2.3)
P 		664
C 11.2
(-3)
A 		616.8
(3)
P 		248.2
(-0.7)
P 		184.8
(-1.3)
P 		318.7
(0)
P 		88.5
(-2.2)
P 		606
avr 24.7
(-3) 		616.3
(3) 		350.9
(0.3) 		254
(-0.7) 		258.1
(-0.6) 		81.9
(-2.4) 		592
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 10.2
(3)
A 		0.5
(-3)
A 		6.3
(0.6)
A 		5.8
(0.3)
A 		10
B 8.1
(1.2)
A 		6.3
(-0.3)
A 		3
(-3)
A 		10.3
(3)
A 		7
C 3.2
(-3)
A 		6
(-0.9)
A 		7.1
(-0.1)
A 		11.2
(3)
A 		8
avr 7.2
(0.6) 		4.3
(-3) 		5.5
(-1.5) 		9.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 8.1
(-3)
A 		195.1
(3)
P 		90.7
(-0.3)
P 		68.8
(-1.1)
P 		70.9
(-1)
P 		16.1
(-2.7)
P 		187
B 6.6
(-3)
A 		227.5
(3)
P 		94.3
(-0.6)
P 		81
(-1)
P 		89.7
(-0.7)
P 		34
(-2.3)
P 		221
C 4.1
(-3)
A 		188.2
(3)
P 		63.2
(-1.1)
P 		37.2
(-1.9)
P 		103.1
(0.2)
P 		29.6
(-2.2)
P 		184
avr 6.3
(-3) 		203.6
(3) 		82.7
(-0.7) 		62.3
(-1.3) 		87.9
(-0.5) 		26.6
(-2.4) 		197
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183738_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9105
Sequence Type Exemplar sequence
Representative Public ID C33H5.1 NCBI
Target Description C33H5.1 /REP_DB=WormBase Gene ID /WP=CE04145 /TR=Q18417 /GB=AAA82262.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068894(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068894 NCBI Caenorhabditis elegans C33H5.1 (C33H5.1) mRNA, complete cds. 9/11 None
SNAP00000004489 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7809144:7812695:1 9/11 None
GENEFINDER00000004493 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7809144:7810664:1 9/11 None
C33H5.1 ENSEMBL cdna:known chromosome:CEL140:IV:7809144:7810664:1 gene:C33H5.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7809149-7810881(+) 88.7 100.0
Public Domain and Genome References
Gene Title
Ensembl C33H5.1
Entrez Gene 183183 Entrez gene
SwissProt Q18417 EMBL-EBI
WormBase CE36582 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82262 Hypothetical protein C33H5.1 [Caenorhabditis elegans] ref|NP_501295.2| C33H5.1 [Caenorhabditis elegans] 1.0E-165
blast AAA82262 Hypothetical protein C33H5.1 [Caenorhabditis elegans] ref|NP_501295.2| C33H5.1 [Caenorhabditis elegans] 1.0E-163
blast AAA82262 Hypothetical protein C33H5.1 [Caenorhabditis elegans] ref|NP_501295.2| C33H5.1 [Caenorhabditis elegans] 1.0E-162
blast CAA99867 Hypothetical protein K01D12.1 [Caenorhabditis elegans] ref|NP_506099.1| K01D12.1 [Caenorhabditis elegans] 2.0E-98
blast CAA99867 Hypothetical protein K01D12.1 [Caenorhabditis elegans] ref|NP_506099.1| K01D12.1 [Caenorhabditis elegans] 7.0E-97
blast CAE75469 Hypothetical protein CBG23469 [Caenorhabditis briggsae] 8.0E-97
blast CAE75469 Hypothetical protein CBG23469 [Caenorhabditis briggsae] 8.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 2.9E-56
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 1.2E-24
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 6.6E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501295.2 1 7-29
C33H5.1 1 7-29
SNAP00000004489 1 7-29
GENEFINDER00000004493 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:183738_AT
tatgcaatcagtggacattctgggaaacaaaaatcgtatattttgacaaaagaataccga
aacgaaacaataatgcacatcagagccgatacattttttggagacattcttcgaaaaccc
atagttgatcttttatggatggatactgaaggttatgagtttccagttctagaaatgatt
cacaaagagggaccattggatgaccaaggaatcaagttatgccaaataaatgtagaaatt
cataaagatatagaaaatgggataactggagaacgaaagatgttccatgactttgtttgg
aggttaatggaagataaaagatatattatgataagaccgttcaatgttttctggtatcat
gattttattcgaattgttcttattaatgttgctgataaggaatgtactgatttgtatgat
ttttatacgtgtctgaaatgtttacatcagggtgtgcggcaaaattgccgagtttgccgt
ttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGCAATCAGTGGACATTCTGGGA 178 657 475 Antisense
ATGCACATCAGAGCCGATACATTTT 626 43 547 Antisense
GAGACATTCTTCGAAAACCCATAGT 199 393 575 Antisense
GAAGGTTATGAGTTTCCAGTTCTAG 4 335 622 Antisense
AAAGAGGGACCATTGGATGACCAAG 388 119 658 Antisense
GACCAAGGAATCAAGTTATGCCAAA 67 383 676 Antisense
AAAGATGTTCCATGACTTTGTTTGG 156 121 750 Antisense
TGATAAGACCGTTCAATGTTTTCTG 670 559 803 Antisense
GAATTGTTCTTATTAATGTTGCTGA 692 323 845 Antisense
ATGTTTACATCAGGGTGTGCGGCAA 354 47 912 Antisense
CAAAATTGCCGAGTTTGCCGTTTGC 479 189 934 Antisense
Sequence Source Affymetrix Proprietary Database