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[183737_at]

Description T16A1.2 /REP_DB=WormBase Gene ID /WP=CE13706 /TR=P91451 /GB=AAB37879.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 10      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 2.9
(-2.6)
A 		3.6
(-2.3)
A 		1.6
(-3)
A 		19.4
(3)
A 		18
B 2.1
(-0.6)
A 		3.9
(3)
A 		1.1
(-2.6)
A 		0.9
(-3)
A 		3
C 1.9
(-3)
A 		1.9
(-3)
A 		2.3
(1.8)
A 		2.4
(3)
A 		1
avr 2.3
(-2.4) 		3.1
(-1.6) 		1.7
(-3) 		7.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.9
(-1.6)
A 		1.3
(-3)
A 		1.4
(-2.8)
A 		2.7
(0.4)
A 		3.8
(3)
A 		2.2
(-0.8)
A 		3
B 2.9
(2.7)
A 		1.9
(-0.3)
A 		1
(-3)
A 		2.6
(1.8)
A 		3
(3)
A 		1
(-3)
A 		2
C 1.4
(-2.9)
A 		6.9
(0.6)
A 		1.7
(-2.7)
A 		2
(-2.5)
A 		1.3
(-3)
A 		10.6
(3)
A 		9
avr 2.1
(-1.7) 		3.4
(0.8) 		1.4
(-3) 		2.4
(-1.1) 		2.7
(-0.6) 		4.6
(3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.1
(-1.3)
A 		0.8
(-2)
A 		0.4
(-3)
A 		2.8
(3)
A 		2
B 0.7
(0.8)
A 		1
(3)
A 		0.3
(-2.3)
A 		0.2
(-3)
A 		1
C 0.6
(-0)
A 		0.5
(-1.5)
A 		0.8
(3)
A 		0.4
(-3)
A 		0
avr 0.8
(0) 		0.8
(0) 		0.5
(-3) 		1.1
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.5
(-1.5)
A 		0.3
(-3)
A 		0.7
(-0)
A 		1.1
(3)
A 		0.5
(-1.5)
A 		1
B 1
(1.8)
A 		0.6
(-0.6)
A 		0.2
(-3)
A 		0.7
(-0)
A 		1.2
(3)
A 		0.4
(-1.8)
A 		1
C 0.5
(-2.8)
A 		2.1
(0.2)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		3.6
(3)
A 		3
avr 0.6
(-1.5) 		1.1
(1) 		0.3
(-3) 		0.6
(-1.5) 		0.9
(0) 		1.5
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183737_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4117
Sequence Type Exemplar sequence
Representative Public ID T16A1.2 NCBI
Target Description T16A1.2 /REP_DB=WormBase Gene ID /WP=CE13706 /TR=P91451 /GB=AAB37879.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061779(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061779 NCBI Caenorhabditis elegans T16A1.2 (T16A1.2) mRNA, complete cds. 11/11 None
SNAP00000022094 ENSEMBL cdna:SNAP chromosome:CEL140:II:2095648:2098610:1 11/11 None
GENEFINDER00000022099 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2095648:2099536:1 11/11 None
T16A1.2 ENSEMBL cdna:known chromosome:CEL140:II:2095305:2098672:1 gene:T16A1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2095303-2098671(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T16A1.2
Entrez Gene 188542 Entrez gene
SwissProt P91451 EMBL-EBI
WormBase CE13706 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37879 Hypothetical protein T16A1.2 [Caenorhabditis elegans] ref|NP_494180.1| T16A1.2 [Caenorhabditis elegans] 0.0
blast AAB37907 Hypothetical protein F07E5.8 [Caenorhabditis elegans] ref|NP_494172.1| F07E5.8 [Caenorhabditis elegans] 0.0
blast AAC26299 Hypothetical protein Y57G7A.6 [Caenorhabditis elegans] ref|NP_493938.1| Y57G7A.6 [Caenorhabditis elegans] 7.0E-65
blast AAC26299 Hypothetical protein Y57G7A.6 [Caenorhabditis elegans] ref|NP_493938.1| Y57G7A.6 [Caenorhabditis elegans] 9.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 2.7E-24
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.5E-23
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 2.7E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494180.1 1 745-767
T16A1.2 1 745-767
SNAP00000022094 1 732-754
Sequence
Target Sequence 
>C. ELEGANS:183737_AT
gaaacttcagacacacagttctcgaaatcgctacatttttttacaaggtcgatacgtggg
cggatcaaatcgttgacccgaaaaaactcaagtttcatcaatttggggattggctcgcaa
aattggctagtttcgaagacataaatctacagttagagaatcgattgattcgagctacat
ggtgggatgatatctattcagtaaacaaaacagtcaaggtagaatttgaagaagcggcgt
ttgcactgtcaaaactggatcttaaattctccgtctacaagtcctcccttctcgcaatgc
caagagtcatgagacaaattgagaaagtgctcaagaacgagacaatcgaagtgcaaccag
aaccaatcaagtctacatatcacggtccaaaagttgtatccactatttattacgaaatga
ccatcttcctcatcgcttatgccgctggaaacctattgattgctgcgatttggtgctatt
gtgaggaagactgtttgtttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTTCAGACACACAGTTCTCGA 295 357 1841 Antisense
ACAAGGTCGATACGTGGGCGGATCA 651 111 1883 Antisense
TGGGCGGATCAAATCGTTGACCCGA 558 553 1897 Antisense
CGATTGATTCGAGCTACATGGTGGG 34 249 2002 Antisense
ATGGTGGGATGATATCTATTCAGTA 70 51 2019 Antisense
TTGAAGAAGCGGCGTTTGCACTGTC 256 693 2066 Antisense
GAACCAATCAAGTCTACATATCACG 577 345 2200 Antisense
AGTCTACATATCACGGTCCAAAAGT 700 59 2210 Antisense
TATTACGAAATGACCATCTTCCTCA 57 663 2248 Antisense
GATTGCTGCGATTTGGTGCTATTGT 148 435 2298 Antisense
TTGTGAGGAAGACTGTTTGTTTCAT 51 703 2319 Antisense
Sequence Source Affymetrix Proprietary Database