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[183736_at]

Description B0511.3 /REP_DB=WormBase Gene ID /WP=CE17342 /TR=O61822 /GB=AAC17650.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 92      4grp_high_8_8 > 14      6grp_total > 99      4grp_total > 09      6grp_high1_sub > 04_05      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 39.1
(-1.7)
P 		20.4
(-3)
A 		56.3
(-0.5)
P 		107.4
(3)
P 		87
B 27.6
(-3)
A 		44
(3)
P 		43.9
(3)
A 		40.8
(1.8)
M 		16
C 36.8
(-2.4)
A 		61.8
(-0.7)
P 		28.5
(-3)
A 		116.6
(3)
P 		88
avr 34.5
(-3) 		42.1
(-2.2) 		42.9
(-2.1) 		88.3
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 56.8
(-0.2)
P 		45.6
(-1)
P 		65.2
(0.4)
P 		19.8
(-3)
A 		99.1
(3)
P 		76.6
(1.3)
P 		79
B 52.4
(-0.5)
P 		33.8
(-3)
P 		43.1
(-1.7)
A 		52.2
(-0.5)
M 		77.8
(3)
P 		73.1
(2.4)
P 		44
C 32.5
(-2.7)
A 		52.5
(0.5)
P 		30.4
(-3)
A 		68.5
(3)
P 		48.9
(-0.1)
M 		55.8
(1)
P 		38
avr 47.2
(-2.4) 		44
(-3) 		46.2
(-2.6) 		46.8
(-2.5) 		75.3
(3) 		68.5
(1.7) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 14.2
(2.2)
P 		4.4
(-3)
A 		14.7
(2.5)
P 		15.7
(3)
P 		11
B 8.8
(-2.7)
A 		10.9
(3)
P 		10.2
(1.1)
A 		8.7
(-3)
M 		2
C 12.2
(-1.6)
A 		17.8
(1.8)
P 		9.9
(-3)
A 		19.7
(3)
P 		10
avr 11.7
(-1.9) 		11
(-3) 		11.6
(-2) 		14.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 10.5
(-1.7)
P 		16.2
(-0.3)
P 		14.2
(-0.8)
P 		5
(-3)
A 		29.9
(3)
P 		18.7
(0.3)
P 		25
B 18.2
(-0.8)
P 		11.3
(-2.8)
P 		10.5
(-3)
A 		13.8
(-2.1)
M 		31.6
(3)
P 		27.3
(1.8)
P 		21
C 12
(-0.7)
A 		16
(1.5)
P 		7.7
(-3)
A 		13.8
(0.3)
P 		15.8
(1.4)
M 		18.7
(3)
P 		11
avr 13.6
(-1.9) 		14.5
(-1.5) 		10.8
(-3) 		10.9
(-3) 		25.8
(3) 		21.6
(1.3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183736_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1277
Sequence Type Exemplar sequence
Representative Public ID B0511.3 NCBI
Target Description B0511.3 /REP_DB=WormBase Gene ID /WP=CE17342 /TR=O61822 /GB=AAC17650.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060386(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060386 NCBI Caenorhabditis elegans B0511.3 (B0511.3) mRNA, complete cds. 11/11 None
SNAP00000031162 ENSEMBL cdna:SNAP chromosome:CEL140:I:10654863:10655898:1 10/11 None
GENEFINDER00000031174 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10654863:10655898:1 11/11 None
B0511.3 ENSEMBL cdna:known chromosome:CEL140:I:10654863:10655898:1 gene:B0511.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10654793-10655829(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0511.3
Entrez Gene 182016 Entrez gene
SwissProt O61822 EMBL-EBI
WormBase CE17342 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17650 Hypothetical protein B0511.3 [Caenorhabditis elegans] ref|NP_492787.1| B0511.3 [Caenorhabditis elegans] 1.0E-144
blast AAC17650 Hypothetical protein B0511.3 [Caenorhabditis elegans] ref|NP_492787.1| B0511.3 [Caenorhabditis elegans] 1.0E-136
blast AAC17650 Hypothetical protein B0511.3 [Caenorhabditis elegans] ref|NP_492787.1| B0511.3 [Caenorhabditis elegans] 1.0E-130
blast T27122 hypothetical protein Y53C10A.7 - Caenorhabditis elegans 3.0E-52
blast T27122 hypothetical protein Y53C10A.7 - Caenorhabditis elegans 4.0E-51
blast T27122 hypothetical protein Y53C10A.7 - Caenorhabditis elegans 5.0E-50
blast T27120 hypothetical protein Y53C10A.8 - Caenorhabditis elegans 1.0E-33
blast T27120 hypothetical protein Y53C10A.8 - Caenorhabditis elegans 2.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.2E-46
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.6E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.9E-42
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.4E-47
Sequence
Target Sequence 
>C. ELEGANS:183736_AT
ctctccgccagttcattgatcaaatggatcctgcaatttcacaaatccgtgtgtccattt
ctgatagtgacaaatgcgatgattgggtttcaagaagtgttcgagttatggcagaaatgc
taagctcgtcgatatatccggatgtgaaaaacatttctacttgtggacttccatcttctc
aaattgctcaaattcttccgagcttccaggctggaaagctggaaaatctggatttatact
attgtggaaaaccgacggctgaagatatggaaacaattgtcaactctgatcagtggaaaa
atgcaaaaaatattagcggatttcgtggtttgagtaatattcgaatcaaggatctccttc
atttctcacttgtttgcgtcgattatgcaacaatttcggtggaaacagctattgaaatca
aggatattttgttgacttctagtaacatcaagcatgcatatttcacctcgaaaagtgtct
tggacgtcaatgttattcgagtttttgatccgaaagcagccaaagttcatcgaaaaagga
atctttccaatttggtgcgaaacacggattttgcagatttcacatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTCCGCCAGTTCATTGATCAAAT 524 231 170 Antisense
GATCCTGCAATTTCACAAATCCGTG 231 417 196 Antisense
AATCCGTGTGTCCATTTCTGATAGT 628 167 213 Antisense
AAGCTCGTCGATATATCCGGATGTG 588 149 291 Antisense
CTACTTGTGGACTTCCATCTTCTCA 217 227 326 Antisense
TTCTTCCGAGCTTCCAGGCTGGAAA 579 689 362 Antisense
GAATCAAGGATCTCCTTCATTTCTC 455 327 512 Antisense
TTCATTTCTCACTTGTTTGCGTCGA 439 689 527 Antisense
TCAAGCATGCATATTTCACCTCGAA 572 631 617 Antisense
GTGTCTTGGACGTCAATGTTATTCG 117 487 644 Antisense
ACACGGATTTTGCAGATTTCACATT 302 109 731 Antisense
Sequence Source Affymetrix Proprietary Database