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[183735_at]

Description K03H9.3 /REP_DB=WormBase Gene ID /WP=CE01997 /TR=Q09579 /GB=AAC46669.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 80      4grp_high_8_8 > 22      6grp_total > 20      4grp_total > 25      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 67
(-3)
P 		77.2
(-2.1)
M 		77.3
(-2.1)
P 		137.4
(3)
P 		70
B 43.1
(-3)
P 		81.7
(1.8)
A 		91.4
(3)
P 		86.8
(2.4)
P 		48
C 31
(-3)
A 		84.3
(1.2)
P 		50.2
(-1.5)
P 		107.6
(3)
P 		77
avr 47
(-3) 		81.1
(0.2) 		73
(-0.5) 		110.6
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 74.5
(0.5)
A 		38.8
(-3)
P 		95.8
(2.6)
P 		75.4
(0.6)
P 		99.9
(3)
P 		58.4
(-1.1)
P 		61
B 42.9
(-3)
P 		86
(3)
P 		63.1
(-0.2)
P 		63.7
(-0.1)
P 		66
(0.2)
P 		48.3
(-2.2)
P 		43
C 53.6
(-1.6)
P 		133.4
(3)
P 		47.4
(-2)
P 		89.7
(0.5)
P 		49.8
(-1.9)
P 		30.4
(-3)
A 		103
avr 57
(-1.3) 		86.1
(3) 		68.8
(0.4) 		76.3
(1.5) 		71.9
(0.9) 		45.7
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 24.4
(3)
P 		16.8
(-3)
M 		20.2
(-0.3)
P 		20.1
(-0.4)
P 		8
B 13.7
(-3)
P 		20.2
(2.2)
A 		21.2
(3)
P 		18.5
(0.8)
P 		8
C 10.3
(-3)
A 		24.2
(3)
P 		17.5
(0.1)
P 		18.1
(0.4)
P 		14
avr 16.1
(-3) 		20.4
(3) 		19.6
(1.9) 		18.9
(0.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 13.7
(-3)
A 		13.8
(-3)
P 		20.9
(-0.4)
P 		19.1
(-1)
P 		30.1
(3)
P 		14.2
(-2.8)
P 		16
B 14.9
(-3)
P 		28.6
(3)
P 		15.3
(-2.8)
P 		16.9
(-2.1)
P 		26.8
(2.2)
P 		18
(-1.6)
P 		14
C 19.9
(-1.1)
P 		40.7
(3)
P 		12.1
(-2.6)
P 		18
(-1.5)
P 		16.1
(-1.8)
P 		10.2
(-3)
A 		31
avr 16.2
(-2.1) 		27.7
(3) 		16.1
(-2.1) 		18
(-1.3) 		24.3
(1.5) 		14.1
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183735_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4935
Sequence Type Exemplar sequence
Representative Public ID K03H9.3 NCBI
Target Description K03H9.3 /REP_DB=WormBase Gene ID /WP=CE01997 /TR=Q09579 /GB=AAC46669.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062892(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062892 NCBI Caenorhabditis elegans K03H9.3 (K03H9.3) mRNA, complete cds. 11/11 None
SNAP00000017293 ENSEMBL cdna:SNAP chromosome:CEL140:II:6423059:6424758:1 11/11 None
GENEFINDER00000017299 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6423059:6424758:1 11/11 None
K03H9.3 ENSEMBL cdna:known chromosome:CEL140:II:6423059:6424758:1 gene:K03H9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6423055-6424755(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03H9.3
Entrez Gene 186969 Entrez gene
SwissProt Q09579 EMBL-EBI
WormBase CE01997 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46669 Hypothetical protein K03H9.3 [Caenorhabditis elegans] ref|NP_495293.1| K03H9.3 [Caenorhabditis elegans] 0.0
blast AAC46701 Hypothetical protein F58F12.3 [Caenorhabditis elegans] ref|NP_495288.1| F58F12.3 [Caenorhabditis elegans] sp|Q09400|YRB3_CAEEL Hypothetical protein F58F12.3 in chromosome II 5.0E-31
blast AAC46667 Hypothetical protein K03H9.1 [Caenorhabditis elegans] ref|NP_495295.1| K03H9.1 [Caenorhabditis elegans] 5.0E-12
Sequence
Target Sequence 
>C. ELEGANS:183735_AT
aatggatagagttcgctcttcgtcaaaaagagcttgacgatcctatggttattgtgaaag
aagctcaagaactttttagaccaaagtatttggaatgcattttgaattacgctgtcactc
aatttccggccaatttggatattgtccacgaattgtgtcttcttgccgaatcaacaggag
agtttctcgattatgtcgatttgctgaagaccgctcttgataataataaaatgtctgagg
atcaatttattcaattggttttgaaatcggaaaaatgtggctcgagtcttgttcgcaaga
agtatgtcgataaatatatatccgtgactccattcacaactgaaaactttggaaattgga
tttcattaattaccactcttcattccaatggatgtaatagttcgtcgaaggacatttgta
tgaaagcaatgagagaatacataggattcgatgagtttgcaaaaattttgaaagaacatt
ggatgtcgacatggccgcaggatcaaattgtttcccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGATAGAGTTCGCTCTTCGTCA 142 163 806 Antisense
AAGAGCTTGACGATCCTATGGTTAT 73 155 833 Antisense
GAATTACGCTGTCACTCAATTTCCG 533 323 909 Antisense
TGTCCACGAATTGTGTCTTCTTGCC 286 557 948 Antisense
GTGTCTTCTTGCCGAATCAACAGGA 273 487 960 Antisense
GTCGATTTGCTGAAGACCGCTCTTG 437 473 1000 Antisense
AATGTGGCTCGAGTCTTGTTCGCAA 284 163 1079 Antisense
TATATCCGTGACTCCATTCACAACT 613 661 1122 Antisense
ATTAATTACCACTCTTCATTCCAAT 49 13 1170 Antisense
ATTGGATGTCGACATGGCCGCAGGA 324 3 1283 Antisense
GCCGCAGGATCAAATTGTTTCCCAC 326 285 1299 Antisense
Sequence Source Affymetrix Proprietary Database