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[183734_at]

Description F27C1.1 /REP_DB=WormBase Gene ID /WP=CE09714 /TR=P91287 /GB=AAB37658.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 05      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 8.3
(-3)
A 		12.4
(-2.5)
A 		22.6
(-1.1)
A 		53.3
(3)
A 		45
B 28.6
(3)
A 		8.3
(-2.9)
A 		12.9
(-1.6)
A 		7.9
(-3)
A 		21
C 62.9
(-0.1)
A 		9.7
(-2.9)
A 		6.8
(-3)
A 		124.8
(3)
A 		118
avr 33.3
(-0.3) 		10.1
(-3) 		14.1
(-2.5) 		62
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 957
1 2 3 4 5 6 range
A 16.1
(-2.9)
A 		9.3
(-3)
A 		5.8
(-3)
A 		122.4
(-2.1)
P 		637.1
(1.9)
P 		773.4
(3)
P 		768
B 9.7
(-3)
A 		50.2
(-2.7)
A 		48.4
(-2.7)
A 		61.5
(-2.6)
A 		638.8
(1.7)
P 		808.2
(3)
P 		799
C 2.8
(-3)
A 		12.8
(-2.9)
A 		3.5
(-3)
A 		104.8
(-2.4)
A 		516.2
(0.2)
P 		959.7
(3)
P 		957
avr 9.5
(-3) 		24.1
(-2.9) 		19.2
(-2.9) 		96.2
(-2.4) 		597.4
(1.2) 		847.1
(3) 		838
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 3
(-2.6)
A 		2.7
(-3)
A 		5.9
(0.8)
A 		7.8
(3)
A 		5
B 9.1
(3)
A 		2.1
(-2.7)
A 		3
(-1.9)
A 		1.7
(-3)
A 		7
C 20.8
(2.9)
A 		2.8
(-2.9)
A 		2.4
(-3)
A 		21
(3)
A 		19
avr 11
(3) 		2.5
(-3) 		3.8
(-2.1) 		10.2
(2.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 320
1 2 3 4 5 6 range
A 3
(-2.9)
A 		3.3
(-2.9)
A 		1.3
(-3)
A 		31
(-2.1)
P 		192.3
(3)
P 		188.3
(2.9)
P 		191
B 3.4
(-3)
A 		16.7
(-2.7)
A 		11.8
(-2.8)
A 		16.3
(-2.7)
A 		259.5
(2.2)
P 		301.4
(3)
P 		298
C 1
(-3)
A 		3.9
(-2.9)
A 		0.9
(-3)
A 		21.1
(-2.6)
A 		167
(0.1)
P 		321.3
(3)
P 		320
avr 2.5
(-3) 		8
(-2.9) 		4.7
(-3) 		22.8
(-2.5) 		206.3
(1.6) 		270.3
(3) 		268
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183734_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2065
Sequence Type Exemplar sequence
Representative Public ID F27C1.1 NCBI
Target Description F27C1.1 /REP_DB=WormBase Gene ID /WP=CE09714 /TR=P91287 /GB=AAB37658.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059196(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059196 NCBI Caenorhabditis elegans F27C1.1 (F27C1.1) mRNA, complete cds. 11/11 None
SNAP00000014507 ENSEMBL cdna:SNAP chromosome:CEL140:I:5434857:5435755:1 11/11 None
GENEFINDER00000014518 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5434857:5435755:1 11/11 None
F27C1.1 ENSEMBL cdna:known chromosome:CEL140:I:5434857:5435755:1 gene:F27C1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5434856-5435755(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F27C1.1
Entrez Gene 172198 Entrez gene
SwissProt P91287 EMBL-EBI
WormBase CE09714 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37658 Hypothetical protein F27C1.1 [Caenorhabditis elegans] ref|NP_491597.1| F27C1.1 [Caenorhabditis elegans] 1.0E-141
blast CAE58978 Hypothetical protein CBG02251 [Caenorhabditis briggsae] 3.0E-42
blast CAB03036 Hypothetical protein F32B6.5 [Caenorhabditis elegans] ref|NP_501780.1| Sperm-Specific family, class S family member (sss-1) [Caenorhabditis elegans] 1.0E-32
Sequence
Target Sequence 
>C. ELEGANS:183734_AT
tgcccagttgatgtgtctattccaaaagaagtcatgaagtgtgcaagctgtcctttgcta
tgcttcaattgctcagttcaaatgcctgtctcacccgttccaacaacaatcgaatcccgt
aagatcaacgagactactcaattgatgatggaattttggaagattgttgcttcaaagtct
gaagaggaaaagctcccatcactattcgaaaatgttgagggactgttttctgtcccattt
tcaacttttggaacgtgggatgatgacaccctgtctggtgtcacatcgcttaattttgaa
aagtctgatgaacaactctccgagcaagatgatgacaaaaccactgtttggagttctaat
ttcccatcggctcatgttttaacagtctatgagaattctgaacagaagacggatgaaatg
gccgatgatgaaatgtcggacacaacttcatcttttctttctactctttccacaacaatg
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCCAGTTGATGTGTCTATTCCAA 246 585 193 Antisense
GTGCAAGCTGTCCTTTGCTATGCTT 514 481 233 Antisense
TGCTATGCTTCAATTGCTCAGTTCA 661 579 248 Antisense
TCACCCGTTCCAACAACAATCGAAT 618 625 283 Antisense
AAAAGCTCCCATCACTATTCGAAAA 48 133 380 Antisense
TTCTGTCCCATTTTCAACTTTTGGA 591 693 420 Antisense
CGTGGGATGATGACACCCTGTCTGG 568 243 446 Antisense
CCTGTCTGGTGTCACATCGCTTAAT 186 267 462 Antisense
TAATTTCCCATCGGCTCATGTTTTA 258 635 549 Antisense
GAAATGTCGGACACAACTTCATCTT 599 361 622 Antisense
CTTTCTACTCTTTCCACAACAATGA 346 223 649 Antisense
Sequence Source Affymetrix Proprietary Database