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[183733_at]

Description F44C8.7 /REP_DB=WormBase Gene ID /WP=CE10390 /TR=O16356 /GB=AAB65894.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 71      6grp_total > 71      4grp_total > 33      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 2.6
(-3)
A 		46.2
(3)
A 		3.7
(-2.8)
A 		10.3
(-1.9)
A 		44
B 3
(-3)
A 		16.7
(-0.3)
A 		32.9
(3)
A 		20.9
(0.6)
A 		30
C 4.9
(-3)
A 		5.6
(-2.9)
A 		15.6
(-1.6)
A 		50
(3)
A 		45
avr 3.5
(-3) 		22.8
(1.9) 		17.4
(0.5) 		27.1
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 46.5
(-3)
A 		150.7
(-0.3)
P 		161.1
(0)
P 		275.5
(3)
P 		188.3
(0.7)
P 		57.9
(-2.7)
A 		229
B 69.5
(-3)
P 		172.7
(-0.6)
P 		179.9
(-0.5)
P 		330.3
(3)
P 		198.6
(-0)
P 		80.1
(-2.8)
P 		261
C 47.7
(-3)
A 		149.4
(-1)
P 		147.7
(-1.1)
P 		358.3
(3)
P 		163.4
(-0.8)
P 		76.7
(-2.4)
P 		311
avr 54.6
(-3) 		157.6
(-0.7) 		162.9
(-0.6) 		321.4
(3) 		183.4
(-0.1) 		71.6
(-2.6) 		267
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.9
(-3)
A 		10
(3)
A 		1
(-2.9)
A 		1.5
(-2.6)
A 		9
B 1
(-3)
A 		4.1
(-0.2)
A 		7.6
(3)
A 		4.4
(0.1)
A 		7
C 1.6
(-3)
A 		1.6
(-3)
A 		5.4
(0.4)
A 		8.4
(3)
A 		7
avr 1.2
(-3) 		5.2
(3) 		4.7
(2.3) 		4.8
(2.4) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 8.6
(-3)
A 		53.6
(1.4)
P 		35.1
(-0.4)
P 		69.9
(3)
P 		56.8
(1.7)
P 		14.1
(-2.5)
A 		61
B 24.2
(-3)
P 		57.5
(0.2)
P 		43.7
(-1.2)
P 		87.5
(3)
P 		80.7
(2.4)
P 		29.9
(-2.5)
P 		63
C 17.7
(-3)
A 		45.6
(0.1)
P 		37.6
(-0.8)
P 		72.1
(3)
P 		52.9
(0.9)
P 		25.7
(-2.1)
P 		54
avr 16.8
(-3) 		52.2
(0.6) 		38.8
(-0.8) 		76.5
(3) 		63.5
(1.7) 		23.2
(-2.4) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183733_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15273
Sequence Type Exemplar sequence
Representative Public ID F44C8.7 NCBI
Target Description F44C8.7 /REP_DB=WormBase Gene ID /WP=CE10390 /TR=O16356 /GB=AAB65894.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071203(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071203 NCBI Caenorhabditis elegans F44C8.7 (F44C8.7) mRNA, complete cds. 11/11 None
SNAP00000011141 ENSEMBL cdna:SNAP chromosome:CEL140:V:2215552:2217919:1 11/11 None
GENEFINDER00000011153 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2215552:2217919:1 11/11 None
F44C8.7 ENSEMBL cdna:known chromosome:CEL140:V:2215552:2217919:1 gene:F44C8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2215551-2217919(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44C8.7
Entrez Gene 178698 Entrez gene
SwissProt O16356 EMBL-EBI
WormBase CE30797 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8643 carbohydrate transport inferred from electronic annotation QuickGO AmiGO
15780 nucleotide-sugar transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
139 Golgi membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5338 nucleotide-sugar transporter activity inferred from electronic annotation QuickGO AmiGO
5351 sugar porter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65894 Hypothetical protein F44C8.7 [Caenorhabditis elegans] ref|NP_503604.2| F44C8.7 [Caenorhabditis elegans] gb|AAK49910.1| F44C8.7-like protein [Caenorhabditis elegans] 0.0
blast AAC02568 Hypothetical protein B0212.4a [Caenorhabditis elegans] ref|NP_741360.1| B0212.4a [Caenorhabditis elegans] 1.0E-125
blast AAL11098 Hypothetical protein B0212.4b [Caenorhabditis elegans] ref|NP_500371.1| B0212.4b [Caenorhabditis elegans] 1.0E-124
blast AAB65894 Hypothetical protein F44C8.7 [Caenorhabditis elegans] ref|NP_503604.2| F44C8.7 [Caenorhabditis elegans] gb|AAK49910.1| F44C8.7-like protein [Caenorhabditis elegans] 1.0E-118
Protein Domains
Database ID Description E-Value
Pfam IPR007271 EMBL-EBI Nucleotide-sugar transporter 1.0E-126
Pfam IPR007271 EMBL-EBI Nucleotide-sugar transporter 5.0E-93
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503604.2 10 24-46,61-83,104-126,130-152,159-176,186-208,221-240,255-277,289-306,310-329
F44C8.7 10 24-46,61-83,104-126,130-152,159-176,186-208,221-240,255-277,289-306,310-329
SNAP00000011141 7 24-41,48-65,75-97,110-129,144-166,178-195,199-218
GENEFINDER00000011153 10 24-46,61-83,104-126,130-152,159-176,186-208,221-240,255-277,289-306,310-329
Sequence
Target Sequence 
>C. ELEGANS:183733_AT
aatggctggctcagggtatggctctcatcggtgtggttcttgtgcagattgacaattcta
acccccatgggaaagtattcggaaatttctggctagggataacggctgtgtttggtatgt
gctggacaagtggctttgctggtgtctactttgaaaaaatgctgaaagaatcgtcagctg
acgtgtgggttcagaatatccggctttcaactttaacactgctttttgctgggatcacaa
tgctctctacagacggagaagccgttcttacaggaaaaatgttctttggctggaattgga
tagtgtggtttgttacaattggtaattcaatcgtaggtctttgcatttcgttggtaatga
agtacgccgataatgtgatgaagacgtattgccaatcgcttgcaataggcctcacagcaa
ttgtgtccatattccttggtgaccgaactcttagtatagatctcatttacggagttctac
ttgtcacatcttctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGCTGGCTCAGGGTATGGCTCT 102 163 485 Antisense
TCTCATCGGTGTGGTTCTTGTGCAG 495 613 507 Antisense
GCAGATTGACAATTCTAACCCCCAT 235 313 528 Antisense
ACAAGTGGCTTTGCTGGTGTCTACT 424 113 610 Antisense
ATATCCGGCTTTCAACTTTAACACT 315 7 680 Antisense
AACACTGCTTTTTGCTGGGATCACA 87 137 699 Antisense
GATCACAATGCTCTCTACAGACGGA 653 421 717 Antisense
GTAGGTCTTTGCATTTCGTTGGTAA 168 457 817 Antisense
CAATCGCTTGCAATAGGCCTCACAG 141 181 877 Antisense
GTGTCCATATTCCTTGGTGACCGAA 94 487 907 Antisense
GAGTTCTACTTGTCACATCTTCTAT 138 399 956 Antisense
Sequence Source Affymetrix Proprietary Database