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[183732_at]

Description Y94A7B.5 /REP_DB=WormBase Gene ID /WP=CE19283 /TR=Q9XXA9 /GB=CAA19567.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 41      4grp_total > 36      6grp_cgc > 60      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 20.3
(0)
A 		38.1
(3)
A 		2.2
(-3)
A 		34.5
(2.4)
A 		36
B 8.3
(-1.6)
A 		13.4
(-0)
A 		23.4
(3)
A 		3.5
(-3)
A 		20
C 44.4
(3)
P 		24.3
(-0.8)
A 		12.4
(-3)
A 		27.6
(-0.2)
A 		32
avr 24.3
(2.5) 		25.3
(3) 		12.7
(-3) 		21.9
(1.4) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 30.4
(3)
A 		3.8
(-2.7)
A 		6.2
(-2.2)
A 		10.5
(-1.2)
A 		21.6
(1.1)
A 		2.3
(-3)
A 		28
B 16.7
(1)
A 		24.2
(3)
A 		19.5
(1.8)
A 		1.2
(-3)
A 		14.6
(0.5)
A 		12.1
(-0.2)
A 		23
C 12.2
(-2.3)
A 		31.3
(0.2)
A 		40.2
(1.4)
A 		52.3
(3)
A 		7.7
(-2.9)
A 		6.6
(-3)
A 		46
avr 19.8
(2.1) 		19.8
(2.1) 		22
(3) 		21.3
(2.7) 		14.6
(0) 		7
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 7.4
(2.3)
A 		8.3
(3)
A 		0.6
(-3)
A 		5
(0.4)
A 		8
B 2.6
(-0.6)
A 		3.3
(0.3)
A 		5.4
(3)
A 		0.7
(-3)
A 		5
C 14.7
(3)
P 		7
(-1.4)
A 		4.3
(-3)
A 		4.6
(-2.8)
A 		10
avr 8.2
(3) 		6.2
(0.5) 		3.4
(-3) 		3.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 5.6
(2.1)
A 		1.3
(-2.3)
A 		1.4
(-2.2)
A 		2.7
(-0.9)
A 		6.5
(3)
A 		0.6
(-3)
A 		6
B 5.8
(1.2)
A 		8.1
(3)
A 		4.7
(0.4)
A 		0.3
(-3)
A 		5.9
(1.3)
A 		4.5
(0.2)
A 		8
C 4.5
(-1.3)
A 		9.5
(2.3)
A 		10.2
(2.8)
A 		10.5
(3)
A 		2.5
(-2.8)
A 		2.2
(-3)
A 		8
avr 5.3
(1.5) 		6.3
(3) 		5.4
(1.6) 		4.5
(0.2) 		5
(1) 		2.4
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183732_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13545
Sequence Type Exemplar sequence
Representative Public ID Y94A7B.5 NCBI
Target Description Y94A7B.5 /REP_DB=WormBase Gene ID /WP=CE19283 /TR=Q9XXA9 /GB=CAA19567.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075097(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075097 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-298) (srh-298) mRNA, complete cds. 11/11 None
SNAP00000042695 ENSEMBL cdna:SNAP chromosome:CEL140:V:17822870:17823579:1 11/11 None
GENEFINDER00000042699 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17821580:17826465:1 11/11 None
Y94A7B.5 ENSEMBL cdna:known chromosome:CEL140:V:17821443:17823579:1 gene:Y94A7B.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17821442-17823579(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-298
Ensembl Y94A7B.5
Entrez Gene 190794 Entrez gene
SwissProt Q9XXA9 EMBL-EBI
WormBase CE19283 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19567 Hypothetical protein Y94A7B.5 [Caenorhabditis elegans] ref|NP_507498.1| Serpentine Receptor, class H family member (srh-298) [Caenorhabditis elegans] 1.0E-168
blast CAA19562 Hypothetical protein Y94A7B.6 [Caenorhabditis elegans] ref|NP_507499.1| Serpentine Receptor, class H family member (srh-300) [Caenorhabditis elegans] 1.0E-108
blast CAA19567 Hypothetical protein Y94A7B.5 [Caenorhabditis elegans] ref|NP_507498.1| Serpentine Receptor, class H family member (srh-298) [Caenorhabditis elegans] 1.0E-102
blast CAA19562 Hypothetical protein Y94A7B.6 [Caenorhabditis elegans] ref|NP_507499.1| Serpentine Receptor, class H family member (srh-300) [Caenorhabditis elegans] 1.0E-97
blast CAC15863 Hypothetical protein Y94A7B.7 [Caenorhabditis elegans] ref|NP_507502.1| Serpentine Receptor, class H family member (srh-303) [Caenorhabditis elegans] 2.0E-94
blast CAA19567 Hypothetical protein Y94A7B.5 [Caenorhabditis elegans] ref|NP_507498.1| Serpentine Receptor, class H family member (srh-298) [Caenorhabditis elegans] 4.0E-93
blast CAD92386 Hypothetical protein K08G2.9 [Caenorhabditis elegans] ref|NP_001024041.1| Serpentine Receptor, class H family member (srh-299) [Caenorhabditis elegans] 2.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.3E-86
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.7E-90
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.7E-81
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507498.1 7 15-36,49-71,91-113,134-153,192-214,244-266,276-295
Y94A7B.5 7 15-36,49-71,91-113,134-153,192-214,244-266,276-295
SNAP00000042695 4 21-43,81-103,133-155,165-184
GENEFINDER00000042699 9 44-66,79-101,139-161,191-213,223-242,282-304,350-367,396-418,428-450
Sequence
Target Sequence 
>C. ELEGANS:183732_AT
ggaataactgtttgcattccggcctacttgaacatcccgaaggatcagaatagtgttcgg
cgtatcttattcgatatgtacccacaggcatgtgaacaggttaccgacaagtcaaagata
cttgtgatgagtctggttgataatacatcagcggtgcaaaattctcttacattaatagta
ttgatcgagattatagtatttgctgttttgttaagagtgaaaattaacaaagccatcaag
aatattcattcatcagtttctcgagataccttgaagaagcaaaaaaggtttatgaacgct
ttaaagatacagatcgctatacccattgctatcatcttcttcccagcagccggtggagct
attctagcatcccagagctccagtcaacaaggcgtggataatctgttaaaccttattaca
tcagttcacggagtactatccactatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATAACTGTTTGCATTCCGGCCT 16 533 436 Antisense
TTCCGGCCTACTTGAACATCCCGAA 559 697 452 Antisense
TAGTGTTCGGCGTATCTTATTCGAT 671 623 486 Antisense
TTCGATATGTACCCACAGGCATGTG 589 691 505 Antisense
CAGGCATGTGAACAGGTTACCGACA 213 207 520 Antisense
ATCAGCGGTGCAAAATTCTCTTACA 589 27 582 Antisense
AATATTCATTCATCAGTTTCTCGAG 125 175 676 Antisense
GATCGCTATACCCATTGCTATCATC 314 417 747 Antisense
GCCGGTGGAGCTATTCTAGCATCCC 9 285 784 Antisense
ACCTTATTACATCAGTTCACGGAGT 336 85 845 Antisense
GTTCACGGAGTACTATCCACTATAC 327 443 859 Antisense
Sequence Source Affymetrix Proprietary Database