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[183731_at]

Description K01D12.1 /REP_DB=WormBase Gene ID /WP=CE06040 /TR=Q21090 /GB=CAA99867.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 7.8
(-3)
A 		19.1
(-0.9)
A 		11.7
(-2.3)
A 		40.6
(3)
A 		33
B 22.5
(-0.6)
A 		39
(3)
A 		17.6
(-1.7)
A 		11.7
(-3)
A 		27
C 35.4
(3)
A 		8.4
(-2.1)
A 		5.2
(-2.7)
A 		3.8
(-3)
A 		32
avr 21.9
(2.8) 		22.2
(3) 		11.5
(-3) 		18.7
(1) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 3.3
(-3)
A 		44.2
(-1.7)
A 		187.5
(3)
P 		37
(-1.9)
A 		40
(-1.8)
A 		91.5
(-0.1)
A 		184
B 19.9
(-3)
A 		72.5
(-1.2)
A 		194.2
(3)
P 		26.5
(-2.8)
A 		30.8
(-2.6)
A 		145.6
(1.3)
P 		174
C 5.3
(-3)
A 		83
(0.2)
A 		131.4
(2.2)
P 		60.9
(-0.7)
A 		27.9
(-2.1)
A 		149.8
(3)
P 		145
avr 9.5
(-3) 		66.6
(-0.9) 		171
(3) 		41.5
(-1.8) 		32.9
(-2.1) 		129
(1.4) 		162
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.8
(-3)
A 		4.2
(-0.3)
A 		3.1
(-2.4)
A 		5.9
(3)
A 		3
B 7.2
(1)
A 		9.6
(3)
A 		4.1
(-1.6)
A 		2.5
(-3)
A 		7
C 11.7
(3)
A 		2.4
(-2)
A 		1.8
(-2.4)
A 		0.6
(-3)
A 		11
avr 7.2
(3) 		5.4
(0.4) 		3
(-3) 		3
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 0.6
(-3)
A 		15.7
(-0.7)
A 		40.8
(3)
P 		9.4
(-1.7)
A 		12.1
(-1.3)
A 		22.3
(0.2)
A 		40
B 6.9
(-3)
A 		24.1
(-0.8)
A 		47.1
(2.1)
P 		7
(-3)
A 		12.5
(-2.3)
A 		54.3
(3)
P 		47
C 2
(-3)
A 		25.3
(-0.1)
A 		33.4
(0.9)
P 		12.2
(-1.7)
A 		9
(-2.1)
A 		50.2
(3)
P 		48
avr 3.2
(-3) 		21.7
(-0.2) 		40.4
(2.7) 		9.5
(-2) 		11.2
(-1.8) 		42.3
(3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183731_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14392
Sequence Type Exemplar sequence
Representative Public ID K01D12.1 NCBI
Target Description K01D12.1 /REP_DB=WormBase Gene ID /WP=CE06040 /TR=Q21090 /GB=CAA99867.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073698(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073698 NCBI Caenorhabditis elegans K01D12.1 (K01D12.1) mRNA, complete cds. 11/11 None
SNAP00000007083 ENSEMBL cdna:SNAP chromosome:CEL140:V:12380177:12381400:1 11/11 None
GENEFINDER00000007102 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12379187:12381853:1 11/11 None
K01D12.1 ENSEMBL cdna:known chromosome:CEL140:V:12380177:12381400:1 gene:K01D12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12380176-12381400(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01D12.1
Entrez Gene 186843 Entrez gene
SwissProt Q21090 EMBL-EBI
WormBase CE06040 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99867 Hypothetical protein K01D12.1 [Caenorhabditis elegans] ref|NP_506099.1| K01D12.1 [Caenorhabditis elegans] 1.0E-177
blast CAA99867 Hypothetical protein K01D12.1 [Caenorhabditis elegans] ref|NP_506099.1| K01D12.1 [Caenorhabditis elegans] 1.0E-157
blast CAE75469 Hypothetical protein CBG23469 [Caenorhabditis briggsae] 1.0E-135
blast CAE75469 Hypothetical protein CBG23469 [Caenorhabditis briggsae] 1.0E-118
blast AAA82262 Hypothetical protein C33H5.1 [Caenorhabditis elegans] ref|NP_501295.2| C33H5.1 [Caenorhabditis elegans] 9.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 2.4E-58
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 2.4E-58
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506099.1 1 20-42
K01D12.1 1 20-42
SNAP00000007083 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:183731_AT
ggtaacacttggtattggacatgatgttgatgcagaaatgagattgaaaaagctctggcc
aaaaaccgaatttttcggagttgatccaagcccagaaatcaataaggatttatatgaagt
aaagcttggtggaaactattttcaaatagctgtcagtggcaaagggggaatgcagaaatc
gtatatattcagaaaagagtatcgcgatgaagccacgatgcacattggagctgactattt
ctttggtgacatgcttcaaaaaccaagagttgatattttgtggatggataccgaaggaaa
tgaattccctgttctggatatgattcatcgtggaggaccattggaccagcgaggtgttac
aatatgccaaatgaatatagaaattcataaagatttaatgaaggatattactggagaacg
agagaaatttcatgactttgtttggaagctgttggccgataaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTAACACTTGGTATTGGACATGAT 136 505 387 Antisense
TGAAAAAGCTCTGGCCAAAAACCGA 88 545 431 Antisense
CGGAGTTGATCCAAGCCCAGAAATC 474 243 462 Antisense
TCGCGATGAAGCCACGATGCACATT 305 599 588 Antisense
GATGCACATTGGAGCTGACTATTTC 466 413 603 Antisense
GACTATTTCTTTGGTGACATGCTTC 308 373 619 Antisense
ATGAATTCCCTGTTCTGGATATGAT 308 43 686 Antisense
GGATATGATTCATCGTGGAGGACCA 691 509 702 Antisense
GTGGAGGACCATTGGACCAGCGAGG 266 489 716 Antisense
GACCAGCGAGGTGTTACAATATGCC 6 385 730 Antisense
GTTTGGAAGCTGTTGGCCGATAAGA 603 451 826 Antisense
Sequence Source Affymetrix Proprietary Database