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[183729_at] 7TM chemoreceptor, srab family

Description F59A7.3 /REP_DB=WormBase Gene ID /WP=CE11440 /TR=O16278 /GB=AAB65334.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 04      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 50.7
(-0.9)
A 		9.2
(-3)
A 		41
(-1.4)
A 		126.1
(3)
P 		117
B 54.3
(1.8)
P 		37.5
(0.1)
A 		6.9
(-3)
A 		65.7
(3)
A 		59
C 44.6
(-2.1)
A 		35.1
(-2.4)
A 		15.2
(-3)
A 		211.7
(3)
P 		197
avr 49.9
(-1.5) 		27.3
(-2.7) 		21
(-3) 		134.5
(3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 21.1
(-1.8)
A 		11.8
(-3)
A 		57.7
(3)
P 		20.2
(-1.9)
A 		30.3
(-0.6)
A 		23.7
(-1.4)
A 		46
B 50
(3)
A 		35.5
(0.3)
A 		17.6
(-3)
A 		22.8
(-2)
A 		25.2
(-1.6)
A 		31.8
(-0.4)
A 		32
C 43.3
(2.5)
A 		45.8
(3)
A 		16.6
(-3)
A 		23.4
(-1.6)
A 		31.3
(0)
A 		18.7
(-2.6)
A 		29
avr 38.1
(3) 		31
(0.3) 		30.6
(0.2) 		22.1
(-3) 		28.9
(-0.5) 		24.7
(-2) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 18.5
(3)
A 		2
(-3)
A 		10.7
(0.2)
A 		18.5
(3)
P 		17
B 17.3
(3)
P 		9.3
(-0.1)
A 		1.6
(-3)
A 		14
(1.7)
A 		16
C 14.8
(-1.1)
A 		10.1
(-2.1)
A 		5.3
(-3)
A 		35.7
(3)
P 		30
avr 16.9
(0.9) 		7.1
(-2.6) 		5.9
(-3) 		22.7
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.9
(-3)
A 		4.2
(-2.8)
A 		12.6
(3)
P 		5.1
(-2.2)
A 		9.1
(0.6)
A 		5.8
(-1.7)
A 		9
B 17.4
(3)
A 		11.8
(0.4)
A 		4.3
(-3)
A 		6
(-2.2)
A 		10.2
(-0.3)
A 		11.9
(0.5)
A 		13
C 16
(3)
A 		14
(2)
A 		4.2
(-3)
A 		4.7
(-2.7)
A 		10.1
(-0)
A 		6.3
(-1.9)
A 		12
avr 12.4
(3) 		10
(1) 		7
(-1.6) 		5.3
(-3) 		9.8
(0.8) 		8
(-0.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183729_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15813
Sequence Type Exemplar sequence
Representative Public ID F59A7.3 NCBI
Target Description F59A7.3 /REP_DB=WormBase Gene ID /WP=CE11440 /TR=O16278 /GB=AAB65334.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071152(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071152 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-13) (srab-13) mRNA, complete cds. 11/11 None
SNAP00000021259 ENSEMBL cdna:SNAP chromosome:CEL140:V:2024531:2027682:-1 10/11 None
GENEFINDER00000021263 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2024531:2027622:-1 11/11 None
F59A7.3 ENSEMBL cdna:known chromosome:CEL140:V:2024531:2027682:-1 gene:F59A7.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2024530-2027682(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srab family
Gene Symbol srab-13
Ensembl F59A7.3
Entrez Gene 186583 Entrez gene
SwissProt O16278 EMBL-EBI
WormBase CE38197 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65334 Serpentine receptor, class ab (class a-like) protein 13 [Caenorhabditis elegans] ref|NP_503553.2| Serpentine Receptor, class AB (class A-like) family member (srab-13) [Caenorhabditis elegans] 1.0E-176
blast AAB65334 Serpentine receptor, class ab (class a-like) protein 13 [Caenorhabditis elegans] ref|NP_503553.2| Serpentine Receptor, class AB (class A-like) family member (srab-13) [Caenorhabditis elegans] 1.0E-146
blast CAE62242 Hypothetical protein CBG06298 [Caenorhabditis briggsae] 1.0E-133
blast AAB65334 Serpentine receptor, class ab (class a-like) protein 13 [Caenorhabditis elegans] ref|NP_503553.2| Serpentine Receptor, class AB (class A-like) family member (srab-13) [Caenorhabditis elegans] 1.0E-112
blast CAE62242 Hypothetical protein CBG06298 [Caenorhabditis briggsae] 1.0E-111
blast CAE62242 Hypothetical protein CBG06298 [Caenorhabditis briggsae] 1.0E-83
blast AAB65334 Serpentine receptor, class ab (class a-like) protein 13 [Caenorhabditis elegans] ref|NP_503553.2| Serpentine Receptor, class AB (class A-like) family member (srab-13) [Caenorhabditis elegans] 9.0E-73
blast AAK70658 Serpentine receptor, class ab (class a-like) protein 23 [Caenorhabditis elegans] ref|NP_503555.2| Serpentine Receptor, class AB (class A-like) family member (srab-23) [Caenorhabditis elegans] 7.0E-57
blast CAE62242 Hypothetical protein CBG06298 [Caenorhabditis briggsae] 4.0E-54
blast AAK70658 Serpentine receptor, class ab (class a-like) protein 23 [Caenorhabditis elegans] ref|NP_503555.2| Serpentine Receptor, class AB (class A-like) family member (srab-23) [Caenorhabditis elegans] 2.0E-42
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503553.2 7 25-47,60-77,103-125,145-167,193-215,246-268,278-300
F59A7.3 7 15-37,49-71,76-93,106-128,155-177,208-230,240-262
SNAP00000021259 5 15-34,41-63,78-100,146-168,178-200
GENEFINDER00000021263 7 5-22,29-51,83-102,210-232,242-264,295-317,327-349
Sequence
Target Sequence 
>C. ELEGANS:183729_AT
gatcgcggttggttacaatcgggcttatgagaattgctcgataaattacggggttctact
gggagcacttcagattgccttagcgattgcttatcttacaacaagatatattcatgcagc
gtttcgtccagctagtttcacttttttctattgccagacactcgtatcaagtactatttc
aaccaacgagacgtatattccattgctgttaataattgtatcacatatagtttctattct
gatattcagatgtcttgaaataaaaaataagaagcttcgagaagtggtggatatcaattt
gagcacaagatacacactggatcagggaagacgatctttcatcgccttgaaatgtttcat
tagttacaactgtttgatggtatcactgataacagcgggtctgatgttccttcatttggt
ttcttcgcatttttcaaagccaaattatatggcaattattgaaatgacccacgcaattcc
actatacggtatgattgtctgtatcgctgtctactggaagttacggaccatcgatggtga
gcagcggaggaacatcacaatggctctacgaggacaggccgtgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCGCGGTTGGTTACAATCGGGCT 119 413 282 Antisense
GGAGCACTTCAGATTGCCTTAGCGA 678 519 343 Antisense
TATATTCATGCAGCGTTTCGTCCAG 457 661 388 Antisense
TCGTCCAGCTAGTTTCACTTTTTTC 254 605 405 Antisense
CGAGACGTATATTCCATTGCTGTTA 340 249 468 Antisense
GGAAGACGATCTTTCATCGCCTTGA 521 531 607 Antisense
TAACAGCGGGTCTGATGTTCCTTCA 452 639 671 Antisense
TGTTCCTTCATTTGGTTTCTTCGCA 310 563 686 Antisense
ACCCACGCAATTCCACTATACGGTA 460 89 748 Antisense
TTGTCTGTATCGCTGTCTACTGGAA 316 705 776 Antisense
TGGCTCTACGAGGACAGGCCGTGCA 456 543 842 Antisense
Sequence Source Affymetrix Proprietary Database