[Home] | [Total List]

[183727_s_at]

Description F48C1.6 /REP_DB=WormBase Gene ID /WP=CE10742 /TR=O01572 /GB=AAB52342.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 74      4grp_highest_8_8 > 20      4grp_high_8_8 > 39      6grp_highest_nonorm > 73      6grp_total > 65      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 254
1 2 3 4 range
A 382
(-3)
P 		449.4
(-0.9)
P 		510.1
(1)
P 		573.4
(3)
P 		191
B 430
(-0.9)
P 		400.5
(-1.6)
P 		586
(3)
P 		343.1
(-3)
P 		243
C 398.7
(-3)
P 		459
(-1.2)
P 		596.6
(3)
P 		535.6
(1.2)
P 		198
avr 403.6
(-3) 		436.3
(-1.8) 		564.2
(3) 		484
(0) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 325
1 2 3 4 5 6 range
A 380.7
(-3)
P 		496.7
(0.1)
P 		608.2
(3)
P 		582.1
(2.3)
P 		418.5
(-2)
P 		593.1
(2.6)
P 		228
B 492.9
(-3)
P 		614.3
(0.4)
P 		705.2
(3)
P 		636.9
(1.1)
P 		523
(-2.1)
P 		652
(1.5)
P 		212
C 456.6
(-3)
P 		624.7
(3)
P 		457.4
(-3)
P 		614.6
(2.6)
P 		475.1
(-2.3)
P 		595.1
(1.9)
P 		168
avr 443.4
(-3) 		578.6
(1.8) 		590.3
(2.2) 		611.2
(2.9) 		472.2
(-2) 		613.4
(3) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 139.1
(3)
P 		97.6
(-1.5)
P 		133.3
(2.4)
P 		83.9
(-3)
P 		55
B 137.1
(3)
P 		98.9
(-0.6)
P 		135.8
(2.9)
P 		73.1
(-3)
P 		64
C 132
(-0.9)
P 		132
(-0.9)
P 		207.9
(3)
P 		90.3
(-3)
P 		118
avr 136.1
(1.2) 		109.5
(-0.9) 		159
(3) 		82.4
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 70.2
(-3)
P 		176.7
(3)
P 		132.4
(0.5)
P 		147.6
(1.4)
P 		126.3
(0.2)
P 		144.4
(1.2)
P 		107
B 171.5
(-2.8)
P 		204.5
(-0.1)
P 		171.3
(-2.8)
P 		168.7
(-3)
P 		212.5
(0.5)
P 		243.1
(3)
P 		74
C 169.2
(0.8)
P 		190.6
(2.4)
P 		116.4
(-3)
P 		123.6
(-2.5)
P 		153.7
(-0.3)
P 		199.2
(3)
P 		83
avr 137
(-3) 		190.6
(2.5) 		140
(-2.7) 		146.6
(-2) 		164.2
(-0.2) 		195.6
(3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183727_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.544
Sequence Type Exemplar sequence
Representative Public ID F48C1.6 NCBI
Target Description F48C1.6 /REP_DB=WormBase Gene ID /WP=CE10742 /TR=O01572 /GB=AAB52342.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059165(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059165 NCBI Caenorhabditis elegans F48C1.6 (F48C1.6) mRNA, complete cds. 11/11 None
SNAP00000025983 ENSEMBL cdna:SNAP chromosome:CEL140:I:5318336:5319274:-1 11/11 None
GENEFINDER00000025998 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5318336:5319274:-1 11/11 None
F48C1.6 ENSEMBL cdna:known chromosome:CEL140:I:5318336:5319274:-1 gene:F48C1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5318335-5319274(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48C1.6
Entrez Gene 172177 Entrez gene
SwissProt O01572 EMBL-EBI
WormBase CE10742 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52342 Hypothetical protein F48C1.6 [Caenorhabditis elegans] ref|NP_491566.1| F48C1.6 [Caenorhabditis elegans] 1.0E-129
blast CAE66943 Hypothetical protein CBG12335 [Caenorhabditis briggsae] 3.0E-90
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491566.1 2 53-72,87-109
F48C1.6 2 53-72,87-109
SNAP00000025983 2 53-72,87-109
GENEFINDER00000025998 2 53-72,87-109
Sequence
Target Sequence 
>C. ELEGANS:183727_S_AT
tgatgagaacttgcaccacggaggttacaatgacacgtggattgccgataactggagcaa
ttctcggcagtttgtatttagctcgtactcgccttcccgctcaatatcattttggtccca
aaggatggccattttatgctataatggggattgcttctctcactgcttcaaatttgatgt
tcatgggcacatgccgagatcgtatcaagccaagaattgatcaactatggaaaaaatacg
acctcgccaagtcatcgacaaactacgaagatattcgccgccaaaatagaggagccggcg
tagttcctttagtgcgaattgatggcgaagcagcagctcagagagttgagaatccgaaac
caaattcatatgattacacgtacagtgttccttcttctggcgataattcttcctacgacg
gttcattctcttcatacaagacagaaataggagagacatcagaattccaacaatctccac
gagctcgccgcccatctccaccaattccttcgccatacggtgttgaagattcaggattca
tgtctggaacaccttctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATGAGAACTTGCACCACGGAGGT 417 565 146 Antisense
GGAGCAATTCTCGGCAGTTTGTATT 133 521 199 Antisense
AGTTTGTATTTAGCTCGTACTCGCC 314 63 214 Antisense
GGCACATGCCGAGATCGTATCAAGC 514 535 331 Antisense
TAGAGGAGCCGGCGTAGTTCCTTTA 6 651 432 Antisense
TACACGTACAGTGTTCCTTCTTCTG 603 641 520 Antisense
TCTGGCGATAATTCTTCCTACGACG 320 607 541 Antisense
GACGGTTCATTCTCTTCATACAAGA 176 377 562 Antisense
CAGAATTCCAACAATCTCCACGAGC 398 203 605 Antisense
CACCAATTCCTTCGCCATACGGTGT 166 203 644 Antisense
GATTCATGTCTGGAACACCTTCTGG 243 431 680 Antisense
Sequence Source Affymetrix Proprietary Database