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[183726_at]

Description B0414.1 /REP_DB=WormBase Gene ID /WP=CE07731 /TR=O01838 /GB=AAB57714.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 11      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 15.6
(-3)
A 		27.4
(-0.7)
A 		32
(0.1)
A 		47
(3)
A 		31
B 39.8
(3)
A 		23.1
(-3)
A 		27.6
(-1.4)
A 		34.9
(1.2)
A 		17
C 30.1
(-1.5)
A 		37.1
(-1.1)
A 		4.9
(-3)
A 		107.4
(3)
P 		103
avr 28.5
(-2) 		29.2
(-1.9) 		21.5
(-3) 		63.1
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 54.8
(3)
M 		2.9
(-3)
A 		41.7
(1.5)
P 		2.8
(-3)
A 		25.2
(-0.4)
A 		4.1
(-2.9)
A 		52
B 35.3
(3)
A 		25
(0.4)
A 		11.9
(-3)
A 		32.8
(2.4)
A 		23.8
(0.1)
A 		23.3
(-0.1)
A 		23
C 16.4
(-0.2)
A 		31
(3)
A 		10.7
(-1.4)
A 		7.5
(-2.1)
A 		3.3
(-3)
A 		21.6
(1)
P 		28
avr 35.5
(3) 		19.6
(-1.5) 		21.4
(-1) 		14.4
(-3) 		17.4
(-2.1) 		16.3
(-2.5) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.7
(-3)
A 		6
(-2.3)
A 		8.4
(3)
A 		6.9
(-0.3)
A 		3
B 12.7
(3)
A 		5.7
(-3)
A 		6.4
(-2.4)
A 		7.4
(-1.5)
A 		7
C 10
(0)
A 		10.7
(0.3)
A 		1.7
(-3)
A 		18.1
(3)
P 		16
avr 9.5
(1.5) 		7.5
(-0.7) 		5.5
(-3) 		10.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 10.1
(3)
M 		1
(-2.8)
A 		9.1
(2.4)
P 		0.7
(-3)
A 		7.6
(1.4)
A 		1
(-2.8)
A 		9
B 12.3
(3)
A 		8.3
(0.4)
A 		2.9
(-3)
A 		8.7
(0.7)
A 		9.7
(1.3)
A 		8.7
(0.7)
A 		9
C 6.1
(0.6)
A 		9.5
(3)
A 		2.7
(-1.9)
A 		1.5
(-2.7)
A 		1.1
(-3)
A 		7.2
(1.4)
P 		8
avr 9.5
(3) 		6.3
(-0.3) 		4.9
(-1.7) 		3.6
(-3) 		6.1
(-0.5) 		5.6
(-1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183726_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1546
Sequence Type Exemplar sequence
Representative Public ID B0414.1 NCBI
Target Description B0414.1 /REP_DB=WormBase Gene ID /WP=CE07731 /TR=O01838 /GB=AAB57714.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059283
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000011723 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5810008:5811402:1 11/11 None
SNAP00000011715 ENSEMBL cdna:SNAP chromosome:CEL140:I:5810699:5811402:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059283 8/11 Cross Hyb Matching Probes None
B0414.1 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5810007-5811402(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB57714 Serpentine receptor, class z protein 4 [Caenorhabditis elegans] ref|NP_491684.2| Serpentine Receptor, class Z family member (srz-4) [Caenorhabditis elegans] 1.0E-175
blast AAB57714 Serpentine receptor, class z protein 4 [Caenorhabditis elegans] ref|NP_491684.2| Serpentine Receptor, class Z family member (srz-4) [Caenorhabditis elegans] 9.0E-96
blast CAE60454 Hypothetical protein CBG04062 [Caenorhabditis briggsae] 2.0E-78
blast CAE60454 Hypothetical protein CBG04062 [Caenorhabditis briggsae] 2.0E-69
blast CAH04713 Hypothetical protein F08A10.2 [Caenorhabditis elegans] ref|NP_001021088.1| Serpentine Receptor, class Z family member (srz-3) [Caenorhabditis elegans] 6.0E-55
blast CAH04713 Hypothetical protein F08A10.2 [Caenorhabditis elegans] ref|NP_001021088.1| Serpentine Receptor, class Z family member (srz-3) [Caenorhabditis elegans] 2.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 4.7E-96
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 2.8E-45
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000011723 7 15-43,64-86,96-115,122-141,215-237,257-279,289-311
SNAP00000011715 3 23-45,65-87,97-119
Sequence
Target Sequence 
>C. ELEGANS:183726_AT
atatggtgtgcgtactttcccagaaaatatgtcactgattgaaaaaaattttgatgtcat
atatgatgaatgttcatcaactatcgacttaatatacgtgcgtatttatgtggctggaga
catattggttatgttcgctgccattatgtatgtaataatgtttatgaagatccggagatg
gagcaagatgactggagatcaactaaataatcccgagaaatatattttctatcaaacagt
tctaatagttgttacaaaacttttggctatcaatgttattctcgttatgtgctatcaaga
cggatacagtgacgattgggcatttggagcatttgttgtatctgatgttttaactacacc
tttcgtgattcaaggttcatatcttctatgtaatcgcacaaatgtagacacagttctgtc
gattcagttcaaaacgatgaaaacttggaagatgataatttgtggtttaggatccgttgc
aga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATGGTGTGCGTACTTTCCCAGAA 546 21 540 Antisense
GAATGTTCATCAACTATCGACTTAA 682 331 607 Antisense
ATACGTGCGTATTTATGTGGCTGGA 650 23 633 Antisense
GGTTATGTTCGCTGCCATTATGTAT 60 507 666 Antisense
ATGTTATTCTCGTTATGTGCTATCA 620 47 812 Antisense
GACGGATACAGTGACGATTGGGCAT 126 377 838 Antisense
GGGCATTTGGAGCATTTGTTGTATC 9 493 857 Antisense
GATGTTTTAACTACACCTTTCGTGA 535 407 883 Antisense
GTGATTCAAGGTTCATATCTTCTAT 38 485 904 Antisense
GACACAGTTCTGTCGATTCAGTTCA 260 367 946 Antisense
TTTGTGGTTTAGGATCCGTTGCAGA 239 667 998 Antisense
Sequence Source Affymetrix Proprietary Database