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[183725_at]

Description F15H10.5 /REP_DB=WormBase Gene ID /WP=CE05642 /TR=Q19489 /GB=CAA98262.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 1.9
(-3)
A 		2
(-3)
A 		5.5
(-2.6)
A 		57.1
(3)
A 		55
B 2.6
(-3)
A 		9.6
(-0.4)
A 		3.3
(-2.7)
A 		18.9
(3)
A 		16
C 1.8
(-2.7)
A 		1.5
(-2.8)
A 		1.2
(-3)
A 		12.1
(3)
A 		11
avr 2.1
(-3) 		4.4
(-2.5) 		3.3
(-2.7) 		29.4
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 11.1
(-2)
A 		1.2
(-3)
A 		36
(0.7)
A 		35.5
(0.6)
A 		58.1
(3)
A 		28.3
(-0.1)
A 		57
B 4.3
(-2.8)
A 		2.6
(-2.9)
A 		1.9
(-3)
A 		71.6
(3)
P 		55.1
(1.6)
A 		31.7
(-0.4)
A 		70
C 20.6
(-0.6)
A 		45.1
(3)
A 		3.9
(-3)
A 		11
(-2)
A 		20.2
(-0.6)
A 		35.1
(1.5)
A 		41
avr 12
(-3) 		16.3
(-2.2) 		13.9
(-2.6) 		39.4
(2.1) 		44.5
(3) 		31.7
(0.6) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.7
(-2.8)
A 		0.4
(-3)
A 		1.4
(-2.3)
A 		8.4
(3)
A 		8
B 0.8
(-3)
A 		2.4
(-0)
A 		0.8
(-3)
A 		4
(3)
A 		3
C 0.6
(-2.3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		2
(3)
A 		2
avr 0.7
(-3) 		1.1
(-2.4) 		0.9
(-2.7) 		4.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2
(-2.4)
A 		0.4
(-3)
A 		7.8
(-0.4)
A 		9
(0)
A 		17.5
(3)
A 		6.9
(-0.7)
A 		17
B 1.5
(-2.7)
A 		0.9
(-2.9)
A 		0.4
(-3)
A 		19
(2.1)
P 		22.4
(3)
A 		11.8
(0.1)
A 		22
C 7.6
(0.1)
A 		13.8
(3)
A 		1
(-3)
A 		2.2
(-2.4)
A 		6.5
(-0.4)
A 		11.7
(2)
A 		13
avr 3.7
(-2.7) 		5
(-2.1) 		3.1
(-3) 		10.1
(0.4) 		15.5
(3) 		10.1
(0.4) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183725_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11429
Sequence Type Exemplar sequence
Representative Public ID F15H10.5 NCBI
Target Description F15H10.5 /REP_DB=WormBase Gene ID /WP=CE05642 /TR=Q19489 /GB=CAA98262.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073275, NM_001028635
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000002815 ENSEMBL cdna:SNAP chromosome:CEL140:V:10420838:10421430:-1 None
SNAP00000002814 ENSEMBL cdna:SNAP chromosome:CEL140:V:10418776:10419607:-1 None
F15H10.10 ENSEMBL cdna:known chromosome:CEL140:V:10418484:10419546:-1 gene:F15H10.10 None
F15H10.5 ENSEMBL cdna:known chromosome:CEL140:V:10420303:10421635:-1 gene:F15H10.5 None
GENEFINDER00000002823 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10418434:10421635:-1 None
NM_001028635 NCBI Caenorhabditis elegans F15H10.10 (F15H10.10) mRNA, complete cds. None
NM_073275 NCBI Caenorhabditis elegans F15H10.5 (F15H10.5) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028636 4/11 Cross Hyb Matching Probes None
SNAP00000002813 4/11 Cross Hyb Matching Probes None
GENEFINDER00000002820 4/11 Cross Hyb Matching Probes None
F15H10.9 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10415913-10421147(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl F15H10.10
F15H10.5
Entrez Gene 184553 Entrez gene
3565946 Entrez gene
SwissProt Q5FC53 EMBL-EBI
Q19489 EMBL-EBI
WormBase CE37823 Wormbase
CE37824 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98262 Hypothetical protein F15H10.5 [Caenorhabditis elegans] ref|NP_505676.2| F15H10.5 [Caenorhabditis elegans] 1.0E-164
blast CAI46600 Hypothetical protein F15H10.10 [Caenorhabditis elegans] ref|NP_001023806.1| F15H10.10 [Caenorhabditis elegans] 1.0E-147
blast CAA98262 Hypothetical protein F15H10.5 [Caenorhabditis elegans] ref|NP_505676.2| F15H10.5 [Caenorhabditis elegans] 1.0E-147
blast CAI46600 Hypothetical protein F15H10.10 [Caenorhabditis elegans] ref|NP_001023806.1| F15H10.10 [Caenorhabditis elegans] 1.0E-138
blast CAI46600 Hypothetical protein F15H10.10 [Caenorhabditis elegans] ref|NP_001023806.1| F15H10.10 [Caenorhabditis elegans] 1.0E-91
blast CAA98262 Hypothetical protein F15H10.5 [Caenorhabditis elegans] ref|NP_505676.2| F15H10.5 [Caenorhabditis elegans] 1.0E-80
blast CAI46601 Hypothetical protein F15H10.9 [Caenorhabditis elegans] ref|NP_001023807.1| F15H10.9 [Caenorhabditis elegans] 1.0E-59
Sequence
Target Sequence 
>C. ELEGANS:183725_AT
tatgagtctgcgacaagtccgttccgagcaattgaaataaatacaaataaatgtttaatg
gaggttagtaagacatatattttccacaattcgttcgaatcaatcagagctttatatttt
gtccacctgaatcgattcgcgaaatcaattgcattgaagaaaattccagagtttgcagtt
tttctgatattagcaaggtgtccgatagttttcaactattatggatttttccgtttttta
tatcaatattgtgatgatattggaatcatggtcggaaatagttatcagtactacaactta
ccagacgcaacattcaagaaaaatggttatgtttatcaaatattattaaatgaatgtttt
ttcgaggtcagagaacatgcaaaccaaacaaaaacaatttctcagcaaatcattgcaagg
ataaacgatcttgaatcttcgtggaatacaagcgcgcacgttctgtatcacattattcca
cgaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGAGTCTGCGACAAGTCCGTTCC 169 655 820 Antisense
GACAAGTCCGTTCCGAGCAATTGAA 231 365 831 Antisense
GACATATATTTTCCACAATTCGTTC 268 371 891 Antisense
AATTCGTTCGAATCAATCAGAGCTT 410 175 907 Antisense
AGAGCTTTATATTTTGTCCACCTGA 415 69 925 Antisense
TTGTCCACCTGAATCGATTCGCGAA 338 709 938 Antisense
GCAAGGTGTCCGATAGTTTTCAACT 326 319 1012 Antisense
ACAACTTACCAGACGCAACATTCAA 561 111 1112 Antisense
GAATCTTCGTGGAATACAAGCGCGC 606 327 1252 Antisense
ATACAAGCGCGCACGTTCTGTATCA 94 25 1265 Antisense
TCTGTATCACATTATTCCACGAAGC 222 609 1281 Antisense
Sequence Source Affymetrix Proprietary Database