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[183724_at]

Description Y11D7A.5 /REP_DB=WormBase Gene ID /WP=CE20188 /TR=Q9XWQ8 /GB=CAA21590.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      6grp_highest_nonorm > 62      6grp_total > 72      4grp_total > 57      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 565
1 2 3 4 range
A 4.2
(-3)
A 		454
(2.8)
P 		466.8
(3)
P 		33.2
(-2.6)
A 		463
B 18.4
(-3)
A 		428.7
(1.5)
P 		560.6
(3)
P 		40
(-2.8)
A 		542
C 20.8
(-2.8)
A 		445.1
(1.7)
P 		569.3
(3)
P 		6.5
(-3)
A 		563
avr 14.5
(-3) 		442.6
(2) 		532.2
(3) 		26.6
(-2.9) 		518

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 900
1 2 3 4 5 6 range
A 70.6
(-3)
P 		693.6
(1.4)
P 		632.7
(1)
P 		917.8
(3)
P 		452.9
(-0.3)
P 		102.8
(-2.8)
P 		847
B 98.5
(-3)
P 		922.3
(3)
P 		618.9
(0.8)
P 		675.7
(1.2)
P 		569.8
(0.4)
P 		147.2
(-2.6)
P 		824
C 118.3
(-3)
P 		776.9
(1.6)
P 		388.4
(-1.1)
P 		970.2
(3)
P 		570.8
(0.2)
P 		164.4
(-2.7)
P 		852
avr 95.8
(-3) 		797.6
(2.5) 		546.7
(0.6) 		854.6
(3) 		531.2
(0.4) 		138.1
(-2.7) 		759
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 1.5
(-3)
A 		98.6
(1.8)
P 		122
(3)
P 		4.9
(-2.8)
A 		121
B 5.9
(-3)
A 		105.9
(1.8)
P 		129.9
(3)
P 		8.5
(-2.9)
A 		124
C 6.9
(-2.8)
A 		128
(0.9)
P 		198.4
(3)
P 		1.1
(-3)
A 		197
avr 4.8
(-3) 		110.8
(1.4) 		150.1
(3) 		4.8
(-3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 294
1 2 3 4 5 6 range
A 13
(-3)
P 		246.7
(3)
P 		137.8
(0.2)
P 		232.8
(2.6)
P 		136.7
(0.2)
P 		25
(-2.7)
P 		234
B 34.3
(-3)
P 		307
(3)
P 		150.3
(-0.4)
P 		179
(0.2)
P 		231.5
(1.3)
P 		54.9
(-2.5)
P 		273
C 43.8
(-3)
P 		237.1
(3)
P 		98.8
(-1.3)
P 		195.1
(1.7)
P 		184.7
(1.4)
P 		55
(-2.7)
P 		193
avr 30.4
(-3) 		263.6
(3) 		129
(-0.5) 		202.3
(1.4) 		184.3
(1) 		45
(-2.6) 		233
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183724_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9426
Sequence Type Exemplar sequence
Representative Public ID Y11D7A.5 NCBI
Target Description Y11D7A.5 /REP_DB=WormBase Gene ID /WP=CE20188 /TR=Q9XWQ8 /GB=CAA21590.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069209(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069209 NCBI Caenorhabditis elegans Y11D7A.5 (Y11D7A.5) mRNA, complete cds. 11/11 None
SNAP00000011203 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9244671:9245442:-1 11/11 None
Y11D7A.5 ENSEMBL cdna:known chromosome:CEL140:IV:9244671:9245442:-1 gene:Y11D7A.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000011225 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9244676-9245448(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y11D7A.5
Entrez Gene 189430 Entrez gene
SwissProt Q9XWQ8 EMBL-EBI
WormBase CE20188 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21590 Hypothetical protein Y11D7A.5 [Caenorhabditis elegans] ref|NP_501610.1| Y11D7A.5 [Caenorhabditis elegans] 2.0E-75
blast CAE69060 Hypothetical protein CBG15073 [Caenorhabditis briggsae] 8.0E-44
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501610.1 1 7-29
Y11D7A.5 1 7-29
SNAP00000011203 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:183724_AT
tttttccactcttcttgatcatcaatgttgttttatcagcggataatattcttatgccat
ttgaacgatttcaatatgatcttgcattgtttttaccagttgtcaaacaagaagttgaat
ttgcagaactatcgaatttgactgatgatcaagctttcgaacaactgaaaacatttttcc
catccttgcaacaacggattcaagagctcagaaatactggattaattgctgatgaattga
gagttaaaaacaaagaagcaattgataaaatgtgtggacaagggcatcgatttggatatc
ttcttgtctctgcaaagttgacaaaaatgaatgaagtacttaatacaaaaaagatcactg
cagcgaacaattcgaaaatgctttctggaatttacaccgagctgaagaattgggaactgt
catcgaaagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTCCACTCTTCTTGATCATCAA 424 675 38 Antisense
TCATCAATGTTGTTTTATCAGCGGA 12 621 56 Antisense
GATCTTGCATTGTTTTTACCAGTTG 570 419 115 Antisense
GACTGATGATCAAGCTTTCGAACAA 578 375 177 Antisense
TGAAAACATTTTTCCCATCCTTGCA 317 573 203 Antisense
GCAACAACGGATTCAAGAGCTCAGA 224 319 225 Antisense
AGGGCATCGATTTGGATATCTTCTT 454 57 318 Antisense
GATATCTTCTTGTCTCTGCAAAGTT 213 427 332 Antisense
AAGATCACTGCAGCGAACAATTCGA 37 155 388 Antisense
GCTTTCTGGAATTTACACCGAGCTG 252 301 417 Antisense
GAATTGGGAACTGTCATCGAAAGCC 526 323 444 Antisense
Sequence Source Affymetrix Proprietary Database