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[183723_at]

Description B0047.4 /REP_DB=WormBase Gene ID /WP=CE07676 /TR=O16567 /GB=AAB66044.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 09      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 0.9
(-3)
A 		5.7
(-1.9)
A 		4.1
(-2.3)
A 		27.1
(3)
A 		26
B 6
(3)
A 		6
(3)
A 		5.8
(2.7)
A 		2.2
(-3)
A 		4
C 1.4
(-3)
A 		1.3
(-3)
A 		4.2
(-1.8)
A 		15.5
(3)
A 		14
avr 2.8
(-3) 		4.3
(-2.3) 		4.7
(-2.1) 		14.9
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 7.1
(-0.5)
A 		14.6
(3)
A 		3.7
(-2.1)
A 		1.7
(-3)
A 		2.2
(-2.8)
A 		10.8
(1.2)
A 		13
B 12.7
(3)
A 		1.2
(-2.8)
A 		2.5
(-2.1)
A 		0.8
(-3)
A 		8.4
(0.8)
A 		8.8
(1)
A 		12
C 1.8
(-2.9)
A 		3.3
(-2.3)
A 		5.2
(-1.6)
A 		17.1
(3)
A 		4.1
(-2)
A 		1.6
(-3)
A 		16
avr 7.2
(3) 		6.4
(1.6) 		3.8
(-3) 		6.5
(1.8) 		4.9
(-1.1) 		7.1
(2.8) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.3
(-3)
A 		1.2
(-1.5)
A 		1.1
(-1.7)
A 		4
(3)
A 		4
B 1.9
(3)
A 		1.5
(1.3)
A 		1.4
(0.9)
A 		0.5
(-3)
A 		1
C 0.5
(-2.7)
A 		0.4
(-3)
A 		1.5
(0)
A 		2.6
(3)
A 		2
avr 0.9
(-3) 		1
(-2.6) 		1.3
(-1.4) 		2.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.3
(-1.9)
A 		5.2
(3)
A 		0.8
(-2.5)
A 		0.4
(-3)
A 		0.7
(-2.6)
A 		2.6
(-0.3)
A 		5
B 4.4
(3)
A 		0.4
(-2.7)
A 		0.6
(-2.4)
A 		0.2
(-3)
A 		3.4
(1.6)
A 		3.3
(1.4)
A 		4
C 0.7
(-2.6)
A 		1
(-2)
A 		1.3
(-1.3)
A 		3.4
(3)
A 		1.3
(-1.3)
A 		0.5
(-3)
A 		3
avr 2.1
(2.5) 		2.2
(3) 		0.9
(-3) 		1.3
(-1.2) 		1.8
(1.2) 		2.1
(2.5) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183723_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4631
Sequence Type Exemplar sequence
Representative Public ID B0047.4 NCBI
Target Description B0047.4 /REP_DB=WormBase Gene ID /WP=CE07676 /TR=O16567 /GB=AAB66044.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061763(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061763 NCBI Caenorhabditis elegans B0047.4 (B0047.4) mRNA, complete cds. 11/11 None
SNAP00000006978 ENSEMBL cdna:SNAP chromosome:CEL140:II:2044703:2046657:-1 11/11 None
GENEFINDER00000006983 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2046054:2046657:-1 11/11 None
B0047.4 ENSEMBL cdna:known chromosome:CEL140:II:2046054:2046657:-1 gene:B0047.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2046052-2046656(-) 76.47 100.0
Public Domain and Genome References
Gene Title
Ensembl B0047.4
Entrez Gene 181827 Entrez gene
SwissProt O16567 EMBL-EBI
WormBase CE07676 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66043 Hypothetical protein B0047.3 [Caenorhabditis elegans] ref|NP_494163.1| B0047.3 [Caenorhabditis elegans] 1.0E-132
blast AAB66044 Hypothetical protein B0047.4 [Caenorhabditis elegans] ref|NP_494164.1| B0047.4 [Caenorhabditis elegans] 7.0E-97
blast AAB66044 Hypothetical protein B0047.4 [Caenorhabditis elegans] ref|NP_494164.1| B0047.4 [Caenorhabditis elegans] 3.0E-91
blast AAC26268 Hypothetical protein F40B1.1 [Caenorhabditis elegans] ref|NP_494287.1| F40B1.1 [Caenorhabditis elegans] 1.0E-67
blast AAB94974 Hypothetical protein F52C6.8 [Caenorhabditis elegans] ref|NP_494122.1| F52C6.8 [Caenorhabditis elegans] 7.0E-36
blast AAF39859 Hypothetical protein F59H6.11 [Caenorhabditis elegans] ref|NP_494158.1| F59H6.11 [Caenorhabditis elegans] 4.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 8.3E-40
Pfam IPR002083 EMBL-EBI MATH 1.4E-11
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.1E-4
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.2E-36
Sequence
Target Sequence 
>C. ELEGANS:183723_AT
tgggcggtcaacagaaaatttcaatattccttggtttattgaaattcttcgcaaaactaa
tcgtttggcagtctactttcactgcgacaaattgaaagaagacgaaatcgactggtctat
tgacgtcgaatacgagattacactcaaatcttccgatggcaaacgaatcacgaaaaaaac
tgatcaccaattcacgaaaaatgaaggatatggatttcccaaacttatgaattgggacac
tctgataaaggattacctgatcgatgacagtattaccattgaagtcactgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGCGGTCAACAGAAAATTTCAAT 613 551 132 Antisense
CTAATCGTTTGGCAGTCTACTTTCA 216 225 188 Antisense
AGTCTACTTTCACTGCGACAAATTG 603 59 201 Antisense
CGAAATCGACTGGTCTATTGACGTC 320 253 234 Antisense
GACGTCGAATACGAGATTACACTCA 604 377 253 Antisense
ATTACACTCAAATCTTCCGATGGCA 295 13 268 Antisense
TCTTCCGATGGCAAACGAATCACGA 597 615 280 Antisense
GAAAAAAACTGATCACCAATTCACG 312 353 303 Antisense
GAAGGATATGGATTTCCCAAACTTA 191 335 334 Antisense
GGGACACTCTGATAAAGGATTACCT 694 491 365 Antisense
AGTATTACCATTGAAGTCACTGTCA 75 63 400 Antisense
Sequence Source Affymetrix Proprietary Database