[Home] | [Total List]

[183722_at]

Description F26A1.6 /REP_DB=WormBase Gene ID /WP=CE02687 /TR=Q19792 /GB=AAA68244.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 05      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 48.2
(1)
A 		6.8
(-3)
A 		24.2
(-1.3)
A 		68.9
(3)
A 		62
B 71.8
(3)
A 		47
(-1.1)
A 		35.9
(-3)
A 		52.7
(-0.2)
A 		36
C 53.7
(-2.9)
P 		52.2
(-3)
A 		59.7
(-2.4)
A 		128.9
(3)
P 		77
avr 57.9
(-0.2) 		35.3
(-3) 		39.9
(-2.4) 		83.5
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 47.7
(-0.7)
A 		88.7
(3)
P 		73.8
(1.6)
P 		51.8
(-0.3)
A 		58
(0.2)
P 		22.5
(-3)
A 		66
B 63.7
(1.6)
P 		73.6
(2.6)
P 		77.6
(3)
A 		38.6
(-1)
A 		35
(-1.3)
P 		18.7
(-3)
A 		59
C 78.4
(2.7)
M 		80.6
(3)
P 		44.5
(-2.1)
A 		67.8
(1.2)
A 		37.8
(-3)
A 		52.7
(-0.9)
P 		43
avr 63.3
(0.9) 		81
(3) 		65.3
(1.1) 		52.7
(-0.4) 		43.6
(-1.5) 		31.3
(-3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 17.5
(3)
A 		1.5
(-3)
A 		6.3
(-1.2)
A 		10.1
(0.2)
A 		16
B 22.9
(3)
A 		11.6
(-1.6)
A 		8.3
(-3)
A 		11.2
(-1.8)
A 		15
C 17.8
(-0.5)
P 		15
(-3)
A 		20.8
(2.2)
A 		21.7
(3)
P 		7
avr 19.4
(3) 		9.4
(-3) 		11.8
(-1.6) 		14.3
(-0.1) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 8.8
(-2.2)
A 		31.5
(3)
P 		16.1
(-0.6)
P 		13.1
(-1.2)
A 		17.5
(-0.2)
P 		5.5
(-3)
A 		26
B 22.2
(2.2)
P 		24.5
(3)
P 		18.8
(1)
A 		10.2
(-1.9)
A 		14.2
(-0.5)
P 		7
(-3)
A 		18
C 29.1
(3)
M 		24.6
(1.5)
P 		11.3
(-3)
A 		13.6
(-2.2)
A 		12.2
(-2.7)
A 		17.7
(-0.8)
P 		18
avr 20
(0.5) 		26.9
(3) 		15.4
(-1.1) 		12.3
(-2.2) 		14.6
(-1.4) 		10.1
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183722_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7143
Sequence Type Exemplar sequence
Representative Public ID F26A1.6 NCBI
Target Description F26A1.6 /REP_DB=WormBase Gene ID /WP=CE02687 /TR=Q19792 /GB=AAA68244.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065593(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065593 NCBI Caenorhabditis elegans F26A1.6 (F26A1.6) mRNA, complete cds. 11/11 A 
GENEFINDER00000001897 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4816001:4817039:-1 11/11 None
F26A1.6 ENSEMBL cdna:known chromosome:CEL140:III:4816001:4817039:-1 gene:F26A1.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001863 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4816000-4817039(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26A1.6
Entrez Gene 184946 Entrez gene
SwissProt Q19792 EMBL-EBI
WormBase CE02687 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_497994 F26A1.6 [Caenorhabditis elegans] gb|AAA68244.1| Hypothetical protein F26A1.6 [Caenorhabditis elegans] 1.0E-113
blast NP_497997 F26A1.8 [Caenorhabditis elegans] gb|AAA68248.1| Hypothetical protein F26A1.8 [Caenorhabditis elegans] 8.0E-97
blast CAE71122 Hypothetical protein CBG17976 [Caenorhabditis briggsae] 2.0E-95
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497994.1 7 20-39,49-66,87-109,124-146,153-175,185-202,209-228
F26A1.6 7 20-39,49-66,87-109,124-146,153-175,185-202,209-228
GENEFINDER00000001897 7 20-39,49-66,87-109,124-146,153-175,185-202,209-228
Sequence
Target Sequence 
>C. ELEGANS:183722_AT
gagatatttttccgttactgtgccaatttctgcatgtggaggtcctattggatcattcat
tggatcaaatttacatcgtcagttggttgcttcgtttgtttatattttagagacttttgc
actggttggatttttactcactaatcctggtttggatttgatagttgtcggtgctctcat
cattatcggaggtttcgttttctttttctttgtgtcaaaggcgggagcttcacttatgca
gacggtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATATTTTTCCGTTACTGTGCCA 440 397 480 Antisense
TACTGTGCCAATTTCTGCATGTGGA 239 647 495 Antisense
GTGGAGGTCCTATTGGATCATTCAT 587 489 515 Antisense
ATTTACATCGTCAGTTGGTTGCTTC 489 13 548 Antisense
GTTGGTTGCTTCGTTTGTTTATATT 314 437 561 Antisense
GAGACTTTTGCACTGGTTGGATTTT 495 391 589 Antisense
TTTTACTCACTAATCCTGGTTTGGA 441 675 611 Antisense
GGATTTGATAGTTGTCGGTGCTCTC 213 509 633 Antisense
GCTCTCATCATTATCGGAGGTTTCG 52 299 652 Antisense
GTGTCAAAGGCGGGAGCTTCACTTA 252 487 691 Antisense
GGAGCTTCACTTATGCAGACGGTAA 125 519 703 Antisense
Sequence Source Affymetrix Proprietary Database