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[183720_at]

Description C42C1.3 /REP_DB=WormBase Gene ID /WP=CE16909 /TR=O44972 /GB=AAB97545.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 34.4
(3)
A 		4
(-2.9)
A 		3.5
(-3)
A 		4.3
(-2.8)
A 		31
B 22.3
(-0.8)
A 		8.9
(-3)
A 		11.7
(-2.5)
A 		46.2
(3)
A 		37
C 3.8
(-3)
A 		39.9
(3)
A 		28.1
(1)
A 		4.9
(-2.8)
A 		36
avr 20.2
(3) 		17.6
(0.3) 		14.4
(-3) 		18.5
(1.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 13.7
(-1.4)
A 		28.2
(1.5)
A 		35.7
(3)
A 		5.4
(-3)
A 		28
(1.5)
A 		18.2
(-0.5)
A 		30
B 45.5
(3)
A 		2.5
(-2.9)
A 		2.1
(-3)
A 		11.2
(-1.7)
A 		17.3
(-0.9)
A 		35.7
(1.6)
A 		43
C 3.7
(-3)
A 		5.9
(-2.7)
A 		7.9
(-2.5)
A 		34.2
(0.5)
A 		33.2
(0.4)
A 		55.6
(3)
A 		52
avr 21
(-0.8) 		12.2
(-3) 		15.2
(-2.3) 		16.9
(-1.8) 		26.2
(0.5) 		36.5
(3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.5
(3)
A 		0.9
(-2.8)
A 		0.9
(-2.8)
A 		0.6
(-3)
A 		12
B 7.1
(0.9)
A 		2.2
(-3)
A 		2.7
(-2.6)
A 		9.8
(3)
A 		8
C 1.3
(-2.7)
A 		11.5
(3)
A 		9.8
(2)
A 		0.8
(-3)
A 		11
avr 7
(3) 		4.9
(-0.8) 		4.5
(-1.5) 		3.7
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.5
(-2.2)
A 		10
(3)
A 		7.8
(1.5)
A 		1.4
(-3)
A 		8.5
(2)
A 		4.4
(-0.9)
A 		9
B 15.8
(3)
A 		0.8
(-2.9)
A 		0.5
(-3)
A 		3
(-2)
A 		7
(-0.5)
A 		13.3
(2)
A 		15
C 1.4
(-3)
A 		1.8
(-2.9)
A 		2
(-2.8)
A 		6.9
(-1.1)
A 		10.7
(0.2)
A 		18.6
(3)
A 		17
avr 6.6
(-0.8) 		4.2
(-2.4) 		3.4
(-3) 		3.8
(-2.7) 		8.7
(0.7) 		12.1
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183720_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9160
Sequence Type Exemplar sequence
Representative Public ID C42C1.3 NCBI
Target Description C42C1.3 /REP_DB=WormBase Gene ID /WP=CE16909 /TR=O44972 /GB=AAB97545.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069930(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069930 NCBI Caenorhabditis elegans C42C1.3 (C42C1.3) mRNA, complete cds. 11/11 None
SNAP00000027934 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12269565:12270376:-1 11/11 None
GENEFINDER00000027958 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12269565:12270376:-1 11/11 None
C42C1.3 ENSEMBL cdna:known chromosome:CEL140:IV:12269565:12270376:-1 gene:C42C1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12269570-12270382(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C42C1.3
Entrez Gene 183399 Entrez gene
SwissProt O44972 EMBL-EBI
WormBase CE16909 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_502331 C42C1.3 [Caenorhabditis elegans] gb|AAB97545.1| Hypothetical protein C42C1.3 [Caenorhabditis elegans] 2.0E-98
blast NP_502331 C42C1.3 [Caenorhabditis elegans] gb|AAB97545.1| Hypothetical protein C42C1.3 [Caenorhabditis elegans] 5.0E-97
blast CAE62213 Hypothetical protein CBG06264 [Caenorhabditis briggsae] 1.0E-55
Sequence
Target Sequence 
>C. ELEGANS:183720_AT
tgcagcgttttgtttttggcggaaagttgtggaagtttaatgaaacgttcggttgttacg
atgattatccacatgtggcaccatttctcgcagtagaacattttgcttcgtttcctgtcc
atccaccaacgttcattttctcgaatgctgccgtttcaaatatattatctatggaagaaa
ttaaaagtgtactcataagattagatgaactaatttcaagtaacaacctgcacaatcatc
cctgtctaatttctcaagcaggtgcacaagcaacaatgcgtcttgcttcgaaagatcaac
tgcgttcagattggaatacttctgtagaaatacctttttgtctatacgtaacgcagaatg
gtgtatgtccccggcagttcgactacgaagatttgcataaacaatcacaatgggtagcgt
tattcgaagaagtaattctgccacttgacaagatgcaaggaagtaaactgtcaaaaattg
caccacatcagcatagttctgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAGCGTTTTGTTTTTGGCGGAAA 596 569 14 Antisense
TATCCACATGTGGCACCATTTCTCG 688 657 79 Antisense
GTAGAACATTTTGCTTCGTTTCCTG 599 455 106 Antisense
TTTTCTCGAATGCTGCCGTTTCAAA 597 673 149 Antisense
AAGTAACAACCTGCACAATCATCCC 112 157 231 Antisense
TCATCCCTGTCTAATTTCTCAAGCA 459 621 249 Antisense
ACCTTTTTGTCTATACGTAACGCAG 129 85 345 Antisense
ACGCAGAATGGTGTATGTCCCCGGC 231 89 364 Antisense
TCCCCGGCAGTTCGACTACGAAGAT 422 597 381 Antisense
GTAATTCTGCCACTTGACAAGATGC 218 463 445 Antisense
GCACCACATCAGCATAGTTCTGTCG 306 315 493 Antisense
Sequence Source Affymetrix Proprietary Database