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[183719_at]

Description R07C3.9 /REP_DB=WormBase Gene ID /WP=CE12538 /TR=O16767 /GB=AAB66230.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 05      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 6.4
(-3)
A 		10.4
(-2.7)
A 		19.9
(-2)
A 		86.6
(3)
A 		80
B 31.1
(3)
A 		10.1
(-1.4)
A 		2.6
(-3)
A 		6.5
(-2.2)
A 		29
C 29.2
(3)
A 		3.9
(-3)
A 		8.4
(-1.9)
A 		24.3
(1.8)
A 		25
avr 22.2
(-0.3) 		8.1
(-3) 		10.3
(-2.6) 		39.1
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 3.2
(-3)
A 		3.9
(-2.9)
A 		6.3
(-2.6)
A 		6.7
(-2.6)
A 		20.4
(-0.9)
A 		52.7
(3)
A 		50
B 3.9
(-3)
A 		7.2
(-2.2)
A 		25.6
(2.3)
A 		5.8
(-2.5)
A 		28.5
(3)
A 		9.1
(-1.7)
A 		25
C 5.3
(-1.8)
A 		4
(-2.8)
A 		3.8
(-3)
A 		11
(3)
A 		5.8
(-1.3)
A 		3.9
(-2.9)
A 		7
avr 4.1
(-3) 		5
(-2.7) 		11.9
(-0.4) 		7.8
(-1.8) 		18.2
(1.8) 		21.9
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.3
(-3)
A 		2.3
(-3)
A 		5.2
(-1.3)
A 		12.7
(3)
A 		10
B 9.9
(3)
A 		2.5
(-1.8)
A 		0.6
(-3)
A 		1.4
(-2.5)
A 		9
C 9.7
(3)
A 		1.1
(-3)
A 		2.9
(-1.7)
A 		4.1
(-0.9)
A 		9
avr 7.3
(3) 		2
(-3) 		2.9
(-2) 		6.1
(1.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.4
(-2.6)
A 		1.4
(-2.6)
A 		1.7
(-2.5)
A 		6.2
(-0.2)
A 		12.8
(3)
A 		12
B 1.4
(-3)
A 		2.4
(-2.4)
A 		6.2
(-0.2)
A 		1.5
(-2.9)
A 		11.6
(3)
A 		3.4
(-1.8)
A 		10
C 2
(2)
A 		1.2
(-2)
A 		1
(-3)
A 		2.2
(3)
A 		1.9
(1.5)
A 		1.3
(-1.5)
A 		1
avr 1.3
(-3) 		1.7
(-2.5) 		2.9
(-1.2) 		1.8
(-2.4) 		6.6
(3) 		5.8
(2.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183719_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5076
Sequence Type Exemplar sequence
Representative Public ID R07C3.9 NCBI
Target Description R07C3.9 /REP_DB=WormBase Gene ID /WP=CE12538 /TR=O16767 /GB=AAB66230.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061447(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061447 NCBI Caenorhabditis elegans R07C3.9 (R07C3.9) mRNA, complete cds. 11/11 None
SNAP00000022234 ENSEMBL cdna:SNAP chromosome:CEL140:II:912012:912991:1 11/11 None
GENEFINDER00000022253 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:912012:915180:1 11/11 None
R07C3.9 ENSEMBL cdna:known chromosome:CEL140:II:912009:913036:1 gene:R07C3.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:912010-912990(+) 99.08 100.0
Public Domain and Genome References
Gene Title
Ensembl R07C3.9
Entrez Gene 173472 Entrez gene
SwissProt O16767 EMBL-EBI
WormBase CE12538 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66238 Hypothetical protein R07C3.8 [Caenorhabditis elegans] ref|NP_493849.1| R07C3.8 [Caenorhabditis elegans] 0.0
blast AAB66230 Hypothetical protein R07C3.9 [Caenorhabditis elegans] ref|NP_493848.1| R07C3.9 [Caenorhabditis elegans] 1.0E-163
blast NP_493860 C32B5.10 [Caenorhabditis elegans] gb|AAB37966.1| Hypothetical protein C32B5.10 [Caenorhabditis elegans] 5.0E-91
blast AAB66238 Hypothetical protein R07C3.8 [Caenorhabditis elegans] ref|NP_493849.1| R07C3.8 [Caenorhabditis elegans] 2.0E-62
blast NP_493860 C32B5.10 [Caenorhabditis elegans] gb|AAB37966.1| Hypothetical protein C32B5.10 [Caenorhabditis elegans] 9.0E-58
Sequence
Target Sequence 
>C. ELEGANS:183719_AT
gatgtccaagctgttctgtggtagacgggatcctattcaagtgaaaacgctgtcgattga
gtgtaaagggtctctacagcttcctgcaggcctctgcttgaaagtgagccatttggaaat
cctgggctctggagtggataaaattgctgatgacttacaaccactactcagaggatccaa
attacaatccatcactgttaacaacgactttaacatacatcatcctatattcaaaaccgc
ccatctcctaatcctcaaaaaccctaataagaacttgttccgagcgactgctgcgagcaa
tgttatggtgaaaagtacttgtcagttcttagatctcttcgacaaaattgtagaacttat
cagaaactggcaatcttatggacaaaaaatcggagcaatctggaatttttcgatgcgtca
ggaacagtttgctctgttaagtttagtgcaactccggaaactgcctggcgccagctataa
aggacatgaaaaattttcggaatctggtcgcagtatcataattccaatcgacaactccgc
cgaagtccatgcttttgtcaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTCCAAGCTGTTCTGTGGTAGA 235 409 264 Antisense
GTGTAAAGGGTCTCTACAGCTTCCT 255 485 324 Antisense
CTTCCTGCAGGCCTCTGCTTGAAAG 510 219 343 Antisense
TGCTGATGACTTACAACCACTACTC 53 583 408 Antisense
TCTCCTAATCCTCAAAAACCCTAAT 581 603 507 Antisense
TAAGAACTTGTTCCGAGCGACTGCT 417 637 531 Antisense
GTCAGTTCTTAGATCTCTTCGACAA 323 467 584 Antisense
TAGTGCAACTCCGGAAACTGCCTGG 221 653 707 Antisense
AACTGCCTGGCGCCAGCTATAAAGG 111 143 722 Antisense
CATAATTCCAATCGACAACTCCGCC 117 211 780 Antisense
GCCGAAGTCCATGCTTTTGTCAAGA 329 285 802 Antisense
Sequence Source Affymetrix Proprietary Database